RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 IPO4Q8TEX9 1081 aaKnown RBP18.27■□□□□ 0.52
VIM-204ENST00000478746 CBWD1Q9BRT8 395 aa18.27■□□□□ 0.52
VIM-204ENST00000478746 SNX25Q9H3E2 840 aa18.27■□□□□ 0.52
VIM-204ENST00000478746 SPHK2Q9NRA0 654 aa18.27■□□□□ 0.52
VIM-204ENST00000478746 CHORDC1Q9UHD1 332 aaPredicted RBP18.27■□□□□ 0.52
VIM-204ENST00000478746 HCN2Q9UL51 889 aa18.27■□□□□ 0.52
VIM-204ENST00000478746 STARD13Q9Y3M8 1113 aa18.27■□□□□ 0.52
VIM-204ENST00000478746 EIF4E1BA6NMX2 242 aaKnown RBP18.26■□□□□ 0.51
VIM-204ENST00000478746 COCHO43405 550 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 BMP15O95972 392 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 NDUFV2P19404 249 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 DUOXA2Q1HG44 320 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 TOGARAM2Q6ZUX3 1019 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 SLCO6A1Q86UG4 719 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 MIB1Q86YT6 1006 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 CHPFQ8IZ52 775 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 NUP93Q8N1F7 819 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 PDZD8Q8NEN9 1154 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 OR5B17Q8NGF7 314 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 FOXJ1Q92949 421 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 ERLEC1Q96DZ1 483 aa18.26■□□□□ 0.51
VIM-204ENST00000478746 SETXQ7Z333 2677 aaKnown RBP18.26■□□□□ 0.51
VIM-204ENST00000478746 TRIM24O15164 1050 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 PTPN1P18031 435 aaKnown RBP18.25■□□□□ 0.51
VIM-204ENST00000478746 MAOBP27338 520 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 CACNA2D1P54289 1103 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 SURF1Q15526 300 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 WDR45BQ5MNZ6 344 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 HECTD3Q5T447 861 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 EGFLAMQ63HQ2 1017 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 BBS7Q8IWZ6 715 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 GPD1LQ8N335 351 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 OR6B3Q8NGW1 331 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 OVCA2Q8WZ82 227 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 FBXO32Q969P5 355 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 DNAJC19Q96DA6 116 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 EPSTI1Q96J88 318 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 LRIG1Q96JA1 1093 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 ZFRQ96KR1 1074 aaKnown RBP18.25■□□□□ 0.51
VIM-204ENST00000478746 ACOX2Q99424 681 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 MRPL45Q9BRJ2 306 aaKnown RBP18.25■□□□□ 0.51
VIM-204ENST00000478746 ZDHHC5Q9C0B5 715 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 ELOVL4Q9GZR5 314 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 RAXQ9Y2V3 346 aa18.25■□□□□ 0.51
VIM-204ENST00000478746 URB1O60287 2271 aaKnown RBP18.24■□□□□ 0.51
VIM-204ENST00000478746 ZNF233A6NK53 670 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 PRPF6O94906 941 aaKnown RBP18.24■□□□□ 0.51
VIM-204ENST00000478746 RTN3O95197 1032 aaPredicted RBP18.24■□□□□ 0.51
VIM-204ENST00000478746 CASP5P51878 434 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 GRAMD4Q6IC98 578 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 SV2BQ7L1I2 683 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 GLRX5Q86SX6 157 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 SETD7Q8WTS6 366 aaKnown RBP18.24■□□□□ 0.51
VIM-204ENST00000478746 ZNF518BQ9C0D4 1074 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 TMEM30AQ9NV96 361 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 KIAA1522Q9P206 1035 aaPredicted RBP18.24■□□□□ 0.51
VIM-204ENST00000478746 STK17AQ9UEE5 414 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 CCDC39Q9UFE4 941 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 APC2O95996 2303 aa18.24■□□□□ 0.51
VIM-204ENST00000478746 PTPRJQ12913 1337 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 ASXL3Q9C0F0 2248 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 KIAA0391O15091 583 aaKnown RBP18.23■□□□□ 0.51
VIM-204ENST00000478746 CBFA2T3O75081 653 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 TACC1O75410 805 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 FAM163BP0C2L3 166 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 IDEP14735 1019 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 GJB2P29033 226 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 GRIK2Q13002 908 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 ALCAMQ13740 583 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 ERICH6BQ5W0A0 696 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 USP49Q70CQ1 688 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 SCFD1Q8WVM8 642 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 COL26A1Q96A83 441 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 BBC3Q96PG8 261 aaPredicted RBP18.23■□□□□ 0.51
VIM-204ENST00000478746 XPO6Q96QU8 1125 aaKnown RBP18.23■□□□□ 0.51
VIM-204ENST00000478746 KIF2CQ99661 725 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 DUSP9Q99956 384 aaKnown RBP18.23■□□□□ 0.51
VIM-204ENST00000478746 B3GNT5Q9BYG0 378 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 SLC6A17Q9H1V8 727 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 CCSER2Q9H7U1 834 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 CD248Q9HCU0 757 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 SCUBE2Q9NQ36 999 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 OLFML3Q9NRN5 406 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 DNAJC17Q9NVM6 304 aaKnown RBP18.23■□□□□ 0.51
VIM-204ENST00000478746 PCOLCE2Q9UKZ9 415 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 NME7Q9Y5B8 376 aa18.23■□□□□ 0.51
VIM-204ENST00000478746 SMG1Q96Q15 3661 aaKnown RBP18.22■□□□□ 0.51
VIM-204ENST00000478746 CLDN5O00501 218 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 CST3P01034 146 aaPredicted RBP18.22■□□□□ 0.51
VIM-204ENST00000478746 IRF1P10914 325 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 SF3A1Q15459 793 aaKnown RBP18.22■□□□□ 0.51
VIM-204ENST00000478746 SNX30Q5VWJ9 437 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 RRAGBQ5VZM2 374 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 WBP2Q969T9 261 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 MRGPRX1Q96LB2 322 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 GABRG3Q99928 467 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 DPEP3Q9H4B8 488 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 CD93Q9NPY3 652 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 RAD54BQ9Y620 910 aa18.22■□□□□ 0.51
VIM-204ENST00000478746 PTPRBP23467 1997 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms