RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 FRMD3A2A2Y4 597 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 SCAMP3O14828 347 aaKnown RBP13.38□□□□□ -0.27
SKA3-206ENST00000475251 NDUFS2O75306 463 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 CD59P13987 128 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 PTPN1P18031 435 aaKnown RBP13.38□□□□□ -0.27
SKA3-206ENST00000475251 CASP5P51878 434 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 MESP2Q0VG99 397 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 PLEKHG6Q3KR16 790 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 WDR45BQ5MNZ6 344 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 SCARA3Q6AZY7 606 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 CHPFQ8IZ52 775 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 RGL4Q8IZJ4 473 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 DEFB119Q8N690 84 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 NAT16Q8N8M0 369 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 TRIML1Q8N9V2 468 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 OR5B17Q8NGF7 314 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 ADAMTS14Q8WXS8 1223 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 FAM84AQ96KN4 292 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 HSPA12BQ96MM6 686 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 XPO6Q96QU8 1125 aaKnown RBP13.38□□□□□ -0.27
SKA3-206ENST00000475251 ZDHHC5Q9C0B5 715 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 NACA2Q9H009 215 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 ZDHHC4Q9NPG8 344 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 FSCN3Q9NQT6 498 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 SPHK2Q9NRA0 654 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 PANK4Q9NVE7 773 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 COMMD8Q9NX08 183 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 CEP192Q8TEP8 1941 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 PCDH15Q96QU1 1955 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 WDFY3Q8IZQ1 3526 aa13.38□□□□□ -0.27
SKA3-206ENST00000475251 IGHV1OR15-9A0A0B4J2B8 117 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 A8MXQ7 604 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 COCHO43405 550 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 TNNI1P19237 187 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 GOLGA8FQ08AF8 430 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 GOLGA8DPQ0D2H9 430 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 SCAPQ12770 1279 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 SNX30Q5VWJ9 437 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 GRAMD4Q6IC98 578 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 TRAPPC11Q7Z392 1133 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 CCDC65Q8IXS2 484 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 B3GALNT2Q8NCR0 500 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 SCFD1Q8WVM8 642 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 MRPL45Q9BRJ2 306 aaKnown RBP13.37□□□□□ -0.27
SKA3-206ENST00000475251 ZNF518BQ9C0D4 1074 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 CCDC86Q9H6F5 360 aaKnown RBP13.37□□□□□ -0.27
SKA3-206ENST00000475251 CYP8B1Q9UNU6 501 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 APOBEC2Q9Y235 224 aaKnown RBP13.37□□□□□ -0.27
SKA3-206ENST00000475251 GPSM3Q9Y4H4 160 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 ADAMTS9Q9P2N4 1935 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 PTPRJQ12913 1337 aa13.37□□□□□ -0.27
SKA3-206ENST00000475251 PKD1L2Q7Z442 2459 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 A0A1W2PQF6 199 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 STAT6P42226 847 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 FAM193AP78312 1265 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 TRPC3Q13507 836 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 WDR72Q3MJ13 1102 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 USP49Q70CQ1 688 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 CBWD2Q8IUF1 395 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 NAXDQ8IW45 347 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 BBS7Q8IWZ6 715 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 IPO4Q8TEX9 1081 aaKnown RBP13.36□□□□□ -0.27
SKA3-206ENST00000475251 ZNF419Q96HQ0 510 aaPredicted RBP13.36□□□□□ -0.27
SKA3-206ENST00000475251 ZFRQ96KR1 1074 aaKnown RBP13.36□□□□□ -0.27
SKA3-206ENST00000475251 GABRG3Q99928 467 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 LRRC27Q9C0I9 530 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.36□□□□□ -0.27
SKA3-206ENST00000475251 DNAJC17Q9NVM6 304 aaKnown RBP13.36□□□□□ -0.27
SKA3-206ENST00000475251 HSPBP1Q9NZL4 362 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 NFE2L3Q9Y4A8 694 aa13.36□□□□□ -0.27
SKA3-206ENST00000475251 SRPRBQ9Y5M8 271 aaKnown RBP13.36□□□□□ -0.27
SKA3-206ENST00000475251 AKAP13Q12802 2813 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 GFRA2O00451 464 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 SH3BP5O60239 455 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 STAU1O95793 577 aaKnown RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 CAPNS1P04632 268 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 FTH1P19P0C7X4 201 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 DLATP10515 647 aaKnown RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 NDUFV2P19404 249 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 ATICP31939 592 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 WASP42768 502 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 SNRNP35Q16560 246 aaKnown RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 ERICH6BQ5W0A0 696 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 TMEM25Q86YD3 366 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 SLC41A1Q8IVJ1 513 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 SYAP1Q96A49 352 aaPredicted RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 SMARCD1Q96GM5 515 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 TNIP3Q96KP6 325 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 B3GNT5Q9BYG0 378 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 DMAP1Q9NPF5 467 aaPredicted RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 WDR35Q9P2L0 1181 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 FBXO2Q9UK22 296 aaPredicted RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 LSM7Q9UK45 103 aaKnown RBP13.35□□□□□ -0.27
SKA3-206ENST00000475251 ADAMTS20P59510 1910 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 MYOFQ9NZM1 2061 aa13.35□□□□□ -0.27
SKA3-206ENST00000475251 DMXL2Q8TDJ6 3036 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 ZFYVE26Q68DK2 2539 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 A0A1B0GTW7 788 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 MEI4A8MW99 385 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 CACNG3O60359 315 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms