RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 BIRC3Q13489 604 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 ZNF699Q32M78 642 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 BBS7Q8IWZ6 715 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 FUKQ8N0W3 1084 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 NAT16Q8N8M0 369 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 WBP2Q969T9 261 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 TNIP3Q96KP6 325 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 SPACA7Q96KW9 195 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 DUSP9Q99956 384 aaKnown RBP23.98■■□□□ 1.43
USP4-208ENST00000464168 SDCBP2Q9H190 292 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 DMAP1Q9NPF5 467 aaPredicted RBP23.98■■□□□ 1.43
USP4-208ENST00000464168 TMEM74BQ9NUR3 256 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 GMIPQ9P107 970 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 BCCIPQ9P287 314 aaKnown RBP eCLIP23.98■■□□□ 1.43
USP4-208ENST00000464168 ATP8B3O60423 1300 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 MYO18AQ92614 2054 aaKnown RBP23.98■■□□□ 1.43
USP4-208ENST00000464168 AKAP13Q12802 2813 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 TCRBV21S2A2A0A5A6 115 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 TULP3O75386 442 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 VNN1O95497 513 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 C4BPAP04003 597 aaKnown RBP23.97■■□□□ 1.43
USP4-208ENST00000464168 PROS1P07225 676 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 CEACAM1P13688 526 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 PGFP49763 221 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 CUL4BQ13620 913 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 NCOA4Q13772 614 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 CACNA1EQ15878 2313 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 TRIM61Q5EBN2 209 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 ZNF667Q5HYK9 610 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 SCARA5Q6ZMJ2 495 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 ARMCX6Q7L4S7 300 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 TMEM25Q86YD3 366 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 ASCC3Q8N3C0 2202 aaKnown RBP23.97■■□□□ 1.43
USP4-208ENST00000464168 ZMIZ2Q8NF64 920 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 KCNV2Q8TDN2 545 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 SMARCD1Q96GM5 515 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 SPHK2Q9NRA0 654 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 COMMD8Q9NX08 183 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 SH3BP1Q9Y3L3 701 aa23.97■■□□□ 1.43
USP4-208ENST00000464168 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.96■■□□□ 1.43
USP4-208ENST00000464168 LRRIQ3A6PVS8 624 aaPredicted RBP23.96■■□□□ 1.43
USP4-208ENST00000464168 AP1G2O75843 785 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 AFMP43652 599 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 AP3M2P53677 418 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 UAP1L1Q3KQV9 507 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 BTBD8Q5XKL5 378 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 ACOT1Q86TX2 421 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 SYT12Q8IV01 421 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 DMAC2Q9NW81 257 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 DEC1Q9P2X7 70 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 HCN2Q9UL51 889 aa23.96■■□□□ 1.43
USP4-208ENST00000464168 FAM208BQ5VWN6 2430 aa23.95■■□□□ 1.43
USP4-208ENST00000464168 BEST1O76090 585 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 LMAN2Q12907 356 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 FOXC1Q12948 553 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 BYSLQ13895 437 aaKnown RBP23.95■■□□□ 1.42
USP4-208ENST00000464168 SPDYCQ5MJ68 293 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 FOXD4L5Q5VV16 416 aaPredicted RBP23.95■■□□□ 1.42
USP4-208ENST00000464168 PGBD3Q8N328 593 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 GOLGA5Q8TBA6 731 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 FOXD4L4Q8WXT5 416 aaPredicted RBP23.95■■□□□ 1.42
USP4-208ENST00000464168 SMOQ99835 787 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 KRT82Q9NSB4 513 aa23.95■■□□□ 1.42
USP4-208ENST00000464168 C1QTNF9BB2RNN3 333 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 TRIM24O15164 1050 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 C1QTNF9P0C862 333 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 ANO4Q32M45 955 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 MIB1Q86YT6 1006 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 GRAMD1CQ8IYS0 662 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 CRYBG2Q8N1P7 616 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 ZNF513Q8N8E2 541 aaPredicted RBP23.94■■□□□ 1.42
USP4-208ENST00000464168 TERB1Q8NA31 727 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 NUSAP1Q9BXS6 441 aaKnown RBP23.94■■□□□ 1.42
USP4-208ENST00000464168 CSNK1G1Q9HCP0 422 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 PCDHA7Q9UN72 937 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 ZFYVE26Q68DK2 2539 aa23.94■■□□□ 1.42
USP4-208ENST00000464168 GREM1O60565 184 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 TLR5O60602 858 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 CLSTN1O94985 981 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 TBX18O95935 607 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 TOP3BO95985 862 aaKnown RBP23.93■■□□□ 1.42
USP4-208ENST00000464168 IRF1P10914 325 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 CCDC130P13994 396 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 SPINK2P20155 84 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 ITPKAP23677 461 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 DLG4P78352 724 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 ORC1Q13415 861 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 FOXD4L6Q3SYB3 417 aaPredicted RBP23.93■■□□□ 1.42
USP4-208ENST00000464168 PREPLQ4J6C6 727 aaPredicted RBP23.93■■□□□ 1.42
USP4-208ENST00000464168 C10orf76Q5T2E6 689 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 RESP18Q5W5W9 173 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 LYSMD4Q5XG99 296 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 UNQ6494/PRO21346Q6UXR6 183 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 FOXD4L3Q6VB84 417 aaPredicted RBP23.93■■□□□ 1.42
USP4-208ENST00000464168 HTR3DQ70Z44 454 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 TRMT11Q7Z4G4 463 aaKnown RBP23.93■■□□□ 1.42
USP4-208ENST00000464168 DEFB124Q8NES8 71 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 SLC2A14Q8TDB8 520 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 NACA2Q9H009 215 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 HMGXB4Q9UGU5 601 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms