RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CYFIP2Q96F07 1278 aa14.74□□□□□ -0.05
USP4-206ENST00000461553 FAXDC2Q96IV6 333 aa14.74□□□□□ -0.05
USP4-206ENST00000461553 ZFRQ96KR1 1074 aaKnown RBP14.74□□□□□ -0.05
USP4-206ENST00000461553 TIGD1Q96MW7 591 aa14.74□□□□□ -0.05
USP4-206ENST00000461553 PNPLA8Q9NP80 782 aa14.74□□□□□ -0.05
USP4-206ENST00000461553 CHORDC1Q9UHD1 332 aaPredicted RBP14.74□□□□□ -0.05
USP4-206ENST00000461553 THADAQ6YHU6 1953 aa14.74□□□□□ -0.05
USP4-206ENST00000461553 PLXND1Q9Y4D7 1925 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 PSMA7O14818 248 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 CYP26A1O43174 497 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 LRP3O75074 770 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 RPP40O75818 363 aaKnown RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 APBB3O95704 486 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 EIF2DP41214 584 aaKnown RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 PXNP49023 591 aaPredicted RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 SEC13P55735 322 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 FKBP3Q00688 224 aaKnown RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 SPEM2Q0P670 501 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 DMC1Q14565 340 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 PUM1Q14671 1186 aaKnown RBP eCLIP14.73□□□□□ -0.05
USP4-206ENST00000461553 SYT13Q7L8C5 426 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 GPRIN1Q7Z2K8 1008 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 GAB3Q8WWW8 586 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 EZH1Q92800 747 aaPredicted RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 ERCC4Q92889 916 aaPredicted RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 FAM124BQ9H5Z6 455 aaPredicted RBP14.73□□□□□ -0.05
USP4-206ENST00000461553 RAB20Q9NX57 234 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 SPTBN2O15020 2390 aa14.73□□□□□ -0.05
USP4-206ENST00000461553 TRIM49BA6NDI0 452 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 PRR5-ARHGAP8B1AHC4 643 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 AXIN1O15169 862 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 APODP05090 189 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 ACO1P21399 889 aaKnown RBP14.72□□□□□ -0.05
USP4-206ENST00000461553 SDHBP21912 280 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 HOXC13P31276 330 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 PPP1R2P41236 205 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 ARHGAP8P85298 464 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 KDSRQ06136 332 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 RSPO4Q2I0M5 234 aaPredicted RBP14.72□□□□□ -0.05
USP4-206ENST00000461553 GAB4Q2WGN9 574 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 ZNF394Q53GI3 561 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 DGLUCYQ7Z3D6 616 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 ZC3H3Q8IXZ2 948 aaKnown RBP14.72□□□□□ -0.05
USP4-206ENST00000461553 FAM160A2Q8N612 972 aaPredicted RBP14.72□□□□□ -0.05
USP4-206ENST00000461553 TSTD1Q8NFU3 115 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 SPATA20Q8TB22 786 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 WHAMMQ8TF30 809 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 SEMA4DQ92854 862 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 CYLDQ9NQC7 956 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 CISHQ9NSE2 258 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 LSM7Q9UK45 103 aaKnown RBP14.72□□□□□ -0.05
USP4-206ENST00000461553 CDV3Q9UKY7 258 aaKnown RBP14.72□□□□□ -0.05
USP4-206ENST00000461553 SCML2Q9UQR0 700 aa14.72□□□□□ -0.05
USP4-206ENST00000461553 HHLA1C9JL84 531 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 PMS1P54277 932 aaKnown RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 MCCD1P59942 119 aaPredicted RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 YWHAEP62258 255 aaKnown RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 GAD2Q05329 585 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 CBWD6Q4V339 395 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 CBWD3Q5JTY5 395 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 CBWD5Q5RIA9 395 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 LY6G5CQ5SRR4 150 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 PPP1R26Q5T8A7 1209 aaPredicted RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 BTBD8Q5XKL5 378 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 ANKRD40Q6AI12 368 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 CACNA2D4Q7Z3S7 1137 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 TADA2BQ86TJ2 420 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 C12orf40Q86WS4 652 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 BBS7Q8IWZ6 715 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 ADGRG2Q8IZP9 1017 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 USP33Q8TEY7 942 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 HEXIM2Q96MH2 286 aaKnown RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 PNKPQ96T60 521 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 ARID3AQ99856 593 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 DUSP9Q99956 384 aaKnown RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 DUSP16Q9BY84 665 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 PARD6AQ9NPB6 346 aa14.71□□□□□ -0.05
USP4-206ENST00000461553 POLR3BQ9NW08 1133 aaPredicted RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 ARMCX3Q9UH62 379 aaPredicted RBP14.71□□□□□ -0.05
USP4-206ENST00000461553 CEP192Q8TEP8 1941 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 KAT7O95251 611 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 ATP5C1P36542 298 aaKnown RBP14.7□□□□□ -0.06
USP4-206ENST00000461553 PSEN1P49768 467 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 KIF11P52732 1056 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 SLC8A3P57103 927 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 PREPLQ4J6C6 727 aaPredicted RBP14.7□□□□□ -0.06
USP4-206ENST00000461553 C2orf27AQ580R0 203 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 RHBDF2Q6PJF5 856 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 ELOA2Q8IYF1 753 aaPredicted RBP14.7□□□□□ -0.06
USP4-206ENST00000461553 ABCA7Q8IZY2 2146 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 TMEM176AQ96HP8 235 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 CDK5RAP1Q96SZ6 601 aaKnown RBP14.7□□□□□ -0.06
USP4-206ENST00000461553 METTL14Q9HCE5 456 aaKnown RBP14.7□□□□□ -0.06
USP4-206ENST00000461553 ARHGEF4Q9NR80 690 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 SEMA4GQ9NTN9 838 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 DLL3Q9NYJ7 618 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 NAGPAQ9UK23 515 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 MAN1B1Q9UKM7 699 aa14.7□□□□□ -0.06
USP4-206ENST00000461553 MMP17Q9ULZ9 603 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms