RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MAGEC3Q8TD91 643 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC5A5Q92911 643 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 OPTNQ96CV9 577 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ZC3H10Q96K80 434 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 RUNDC3BQ96NL0 473 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ACO2Q99798 780 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PARVBQ9HBI1 364 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PRDM6Q9NQX0 595 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KCND1Q9NSA2 647 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KLHL11Q9NVR0 708 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 GFOD1Q9NXC2 390 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 GGA3Q9NZ52 723 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 FRRS1LQ9P0K9 344 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 FETUBQ9UGM5 382 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ANAPC5Q9UJX4 755 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 DSEQ9UL01 958 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 AP4E1Q9UPM8 1137 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 IGF2BP3O00425 579 aaKnown RBP eCLIP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 AQP7O14520 342 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 TPP1O14773 563 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 AREL1O15033 823 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SUPT3HO75486 399 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KRT37O76014 449 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 GNAT1P11488 350 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 NAGAP17050 411 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PPARGP37231 505 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 DIO1P49895 249 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 DNM2P50570 870 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KRT85P78386 507 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PRKCEQ02156 737 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 FBXO48Q5FWF7 155 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 RETSATQ6NUM9 610 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 RGS9BPQ6ZS82 235 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KDELC2Q7Z4H8 507 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 FAM124AQ86V42 546 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 EXOC3L1Q86VI1 746 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC22A9Q8IVM8 553 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC103Q8IW40 242 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PPIL6Q8IXY8 311 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC33Q8N5R6 958 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 PCDH19Q8TAB3 1148 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ZNF507Q8TCN5 953 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 BCAS4Q8TDM0 211 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 TTC17Q96AE7 1141 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 FAM149B1Q96BN6 582 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 VWCEQ96DN2 955 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC2A13Q96QE2 648 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 NUDCD1Q96RS6 583 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 MPHOSPH8Q99549 860 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ORAI3Q9BRQ5 295 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 DDX23Q9BUQ8 820 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ACPTQ9BZG2 426 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 UBXN6Q9BZV1 441 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 INTS2Q9H0H0 1204 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ZCWPW1Q9H0M4 648 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 LY9Q9HBG7 655 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CABP5Q9NP86 173 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 VPS45Q9NRW7 570 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ANO10Q9NW15 660 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 INVSQ9Y283 1065 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SESN1Q9Y6P5 492 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 MRC1P22897 1456 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 WDR19Q8NEZ3 1342 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CYP3A7-CYP3A51PA0A087WV96 503 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC78A2IDD5 438 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 GOLGA8SH3BPF8 625 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 STX16-NPEPL1H3BU86 382 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 M0R3H8 397 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 LIN7AO14910 233 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 IKBKBO14920 756 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 RNMTO43148 476 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TGM5O43548 720 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 FRS3O43559 492 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ZC3H11AO75152 810 aaKnown RBP eCLIP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TACC1O75410 805 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SEC31AO94979 1220 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 THBDP07204 575 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ENO2P09104 434 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ALOX5P09917 674 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 DRD2P14416 443 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CSF2RAP15509 400 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 DPEP1P16444 411 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CYP3A7P24462 503 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CD97P48960 835 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SERPINB8P50452 374 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 VBP1P61758 197 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 OLR1P78380 273 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 KLC1Q07866 573 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CSTF3Q12996 717 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PPFIA1Q13136 1202 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 DCAF17Q5H9S7 520 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 C1orf141Q5JVX7 400 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TMEM240Q5SV17 173 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 HHIPL2Q6UWX4 724 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CDH24Q86UP0 819 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC51BQ86UW2 128 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 FAM186BQ8IYM0 893 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ARHGAP18Q8N392 663 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms