RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 TRIM58Q8NG06 486 aa15.34■□□□□ 0.05
TNF-208ENST00000449264 MRPL38Q96DV4 380 aaKnown RBP15.34■□□□□ 0.05
TNF-208ENST00000449264 GMIPQ9P107 970 aa15.34■□□□□ 0.05
TNF-208ENST00000449264 TMEM59LQ9UK28 342 aa15.34■□□□□ 0.05
TNF-208ENST00000449264 HYOU1Q9Y4L1 999 aa15.34■□□□□ 0.05
TNF-208ENST00000449264 PRRC2BQ5JSZ5 2229 aaKnown RBP15.33■□□□□ 0.04
TNF-208ENST00000449264 DAB1O75553 588 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 LTFP02788 710 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 CSH1P0DML2 217 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 CSH2P0DML3 217 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 GPD1P21695 349 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 PSMA2P25787 234 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 SCNN1AP37088 669 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 HADHBP55084 474 aaKnown RBP15.33■□□□□ 0.04
TNF-208ENST00000449264 YWHAZP63104 245 aaKnown RBP15.33■□□□□ 0.04
TNF-208ENST00000449264 OGDHQ02218 1023 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 TAF10Q12962 218 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 PPM1LQ5SGD2 360 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 PM20D1Q6GTS8 502 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 TRNP1Q6NT89 227 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 NYAP1Q6ZVC0 841 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 RXFP2Q8WXD0 754 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 IRGQQ8WZA9 623 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 EDEM1Q92611 657 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 KHSRPQ92945 711 aaKnown RBP eCLIP15.33■□□□□ 0.04
TNF-208ENST00000449264 PRDM12Q9H4Q4 367 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 SCML2Q9UQR0 700 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 HCFC2Q9Y5Z7 792 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 SZT2Q5T011 3432 aa15.33■□□□□ 0.04
TNF-208ENST00000449264 A0A1W2PQH9 124 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CAPN9O14815 690 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CCL16O15467 120 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 ZNF500O60304 480 aaPredicted RBP15.32■□□□□ 0.04
TNF-208ENST00000449264 FTCDO95954 541 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 PDGFRAP16234 1089 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 YWHAGP61981 247 aaKnown RBP eCLIP15.32■□□□□ 0.04
TNF-208ENST00000449264 RBM10P98175 930 aaKnown RBP15.32■□□□□ 0.04
TNF-208ENST00000449264 ZNF252P-AS1Q0IIN9 211 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 DUSP6Q16828 381 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CDO1Q16878 200 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 PRPF38BQ5VTL8 546 aaKnown RBP15.32■□□□□ 0.04
TNF-208ENST00000449264 DAB2IPQ5VWQ8 1189 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CPNE8Q86YQ8 564 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 DEFB106AQ8N104 65 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 SLC22A17Q8WUG5 538 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 PPP2R3CQ969Q6 453 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CEP295NLQ96MC4 621 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CFAP57Q96MR6 1250 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 SLITRK1Q96PX8 696 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 WDR24Q96S15 920 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 POPDC2Q9HBU9 364 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 ASNSD1Q9NWL6 643 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 IP6K2Q9UHH9 426 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 USTQ9Y2C2 406 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 DOCK6Q96HP0 2047 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 OBSL1O75147 1896 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 C2CD4BA6NLJ0 364 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 RFPL2O75678 378 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 GLI1P08151 1106 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 NCAM1P13591 858 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 SDC4P31431 198 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 GTF2F1P35269 517 aaKnown RBP eCLIP15.32■□□□□ 0.04
TNF-208ENST00000449264 PGFP49763 221 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 DCAF6Q58WW2 860 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 BSPRYQ5W0U4 402 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 C11orf63Q6NUN7 778 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 ITIH5Q86UX2 942 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 SYCE1Q8N0S2 351 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 SCML4Q8N228 414 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 ELMOD1Q8N336 334 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 LRRC57Q8N9N7 239 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 PSMG2Q969U7 264 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 CALR3Q96L12 384 aaKnown RBP15.32■□□□□ 0.04
TNF-208ENST00000449264 TTYH1Q9H313 450 aaPredicted RBP15.32■□□□□ 0.04
TNF-208ENST00000449264 PLEKHA4Q9H4M7 779 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 IGFLR1Q9H665 355 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 NMUR1Q9HB89 426 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.32■□□□□ 0.04
TNF-208ENST00000449264 IL37Q9NZH6 218 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 EHD2Q9NZN4 543 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 NAALADL1Q9UQQ1 740 aa15.32■□□□□ 0.04
TNF-208ENST00000449264 SOX1O00570 391 aaPredicted RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 SPOPO43791 374 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 PROSCO94903 275 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 TNNT1P13805 278 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 HMGA1P17096 107 aaKnown RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 DNA2P51530 1060 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 ZNF143P52747 638 aaPredicted RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 ATP11AP98196 1134 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 C15orf59Q2T9L4 293 aaPredicted RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 ZNF697Q5TEC3 545 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 BTBD8Q5XKL5 378 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 SYT10Q6XYQ8 523 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 DNAJB7Q7Z6W7 309 aaPredicted RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 SCD5Q86SK9 330 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 FNIP1Q8TF40 1166 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 ZNF512Q96ME7 567 aaPredicted RBP15.31■□□□□ 0.04
TNF-208ENST00000449264 SLC2A13Q96QE2 648 aa15.31■□□□□ 0.04
TNF-208ENST00000449264 TTLL2Q9BWV7 592 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms