RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SPACA7Q96KW9 195 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 CNOT6LQ96LI5 555 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 XPO6Q96QU8 1125 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 CDK5RAP1Q96SZ6 601 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 KCNK16Q96T55 309 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 NT5C1AQ9BXI3 368 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 ZNF518BQ9C0D4 1074 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 KCTD10Q9H3F6 313 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 DPEP3Q9H4B8 488 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 OCEL1Q9H607 264 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 CSNK1G1Q9HCP0 422 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 PNPLA8Q9NP80 782 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 ARHGEF4Q9NR80 690 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 CFAP97Q9P2B7 532 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 WDR35Q9P2L0 1181 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 DEC1Q9P2X7 70 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 CHORDC1Q9UHD1 332 aaPredicted RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 HOOK1Q9UJC3 728 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 LSM7Q9UK45 103 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 PCDHA5Q9Y5H7 936 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 SDK1Q7Z5N4 2213 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 GPR179Q6PRD1 2367 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 PI4KAP42356 2102 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 ABCA7Q8IZY2 2146 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 FAM237AA0A1B0GTK4 181 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 A0A1B0GVL5 298 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 A0A1W2PQ27 194 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 A0A1W2PQ64 194 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 A0A1W2PQD8 194 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 DCDC2BA2VCK2 349 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CLDN5O00501 218 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 KHNYNO15037 678 aaKnown RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 HOXC11O43248 304 aaPredicted RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 COCHO43405 550 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 RHOBTB3O94955 611 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 KAT7O95251 611 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CAVIN2O95810 425 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CYP17A1P05093 508 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 ADRB1P08588 477 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 ZDHHC11BP0C7U3 371 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 FAM200BP0CF97 657 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 NR2F2P24468 414 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CASP1P29466 404 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 MPLP40238 635 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 OPRD1P41143 372 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 PIK3CAP42336 1068 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 PLA2G4AP47712 749 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 PXNP49023 591 aaPredicted RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 CASP4P49662 377 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 NDST1P52848 882 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 SLC5A3P53794 718 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CDH8P55286 799 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 IFRD2Q12894 506 aaPredicted RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 ADAM9Q13443 819 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CRY1Q16526 586 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 PPM1JQ5JR12 505 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 PLA2G2CQ5R387 149 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 DAB2IPQ5VWQ8 1189 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 PKN3Q6P5Z2 889 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 KLHDC10Q6PID8 442 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 RHBDF2Q6PJF5 856 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 HTR3DQ70Z44 454 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 RABEPKQ7Z6M1 372 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 ACOT1Q86TX2 421 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 RASSF3Q86WH2 238 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 SPNS2Q8IVW8 549 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 FUKQ8N0W3 1084 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 ARHGAP18Q8N392 663 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 GUF1Q8N442 669 aaKnown RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 KIAA0895Q8NCT3 520 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 RIN3Q8TB24 985 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 WHAMMQ8TF30 809 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 CYFIP2Q96F07 1278 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 FAM84AQ96KN4 292 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 HHIPQ96QV1 700 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 HNRNPABQ99729 332 aaKnown RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 DUSP15Q9H1R2 295 aaPredicted RBP7.48□□□□□ -1.21
VPS41-208ENST00000448833 SMYD3Q9H7B4 428 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 SPHK2Q9NRA0 654 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 RMND1Q9NWS8 449 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 C2orf42Q9NWW7 574 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 SMPD4Q9NXE4 827 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 SCML2Q9UQR0 700 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 HPSEQ9Y251 543 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 ZNF510Q9Y2H8 683 aa7.48□□□□□ -1.21
VPS41-208ENST00000448833 BCLAF3A2AJT9 711 aaKnown RBP7.47□□□□□ -1.21
VPS41-208ENST00000448833 TBC1D3BA6NDS4 549 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 GOLGA6L4A6NEF3 574 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 NPC1O15118 1278 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 CETN3O15182 167 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 TLR5O60602 858 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 VNN1O95497 513 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 HLA-DRAP01903 254 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 RALAP11233 206 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 HOXD12P35452 270 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 CHKAP35790 457 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 ZNF132P52740 706 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 CACNA2D1P54289 1103 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 SEC13P55735 322 aa7.47□□□□□ -1.21
VPS41-208ENST00000448833 MAP3K7CLP57077 242 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms