RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ERGIC3Q9Y282 383 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 TTLL1O95922 423 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 FAM102AQ5T9C2 384 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SEL1L3Q68CR1 1132 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 TMEM270Q6UE05 265 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PLET1Q6UQ28 207 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 R3HCC1LQ7Z5L2 792 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SLC44A2Q8IWA5 706 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF655Q8N720 491 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PIGOQ8TEQ8 1089 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 CCDC3Q9BQI4 270 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HEMGNQ9BXL5 484 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SRP68Q9UHB9 627 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 MEMO1Q9Y316 297 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 EFCAB5A4FU69 1503 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 C2orf81A6NN90 581 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HS6ST1O60243 411 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ACSL4O60488 711 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 RBP3P10745 1247 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 MNDAP41218 407 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 GRIK3Q13003 919 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PTK7Q13308 1070 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 DENND1BQ6P3S1 775 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 RELL1Q8IUW5 271 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 INO80EQ8NBZ0 244 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 KCTD14Q9BQ13 255 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PAK5Q9P286 719 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PCDHB15Q9Y5E8 787 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 CLIC2O15247 247 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PSIP1O75475 530 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PDIA3P30101 505 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 GSTM5P46439 218 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 COPZ1P61923 177 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 GTF2IP78347 998 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 TWF2Q6IBS0 349 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SYNJ2O15056 1496 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 LOC100506127A0A0U1RQW1 187 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SEC24AO95486 1093 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 THRBP10828 461 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PLCL1Q15111 1095 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 STILQ15468 1287 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HLA-DQA1Q5Y7H0 255 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 CATSPER4Q7RTX7 472 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ARPINQ7Z6K5 226 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 MYDGFQ969H8 173 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 TP53INP1Q96A56 240 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 FAM118BQ9BPY3 351 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 RRN3Q9NYV6 651 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SHOC2Q9UQ13 582 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HBS1LQ9Y450 684 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ATRXP46100 2492 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 A0A088AWK7 358 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SIN3BO75182 1162 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 KRT36O76013 467 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF10P21506 573 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 RFX3P48380 749 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF827Q17R98 1081 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SNRNP48Q6IEG0 339 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 SRFBP1Q8NEF9 429 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 METTL8Q9H825 291 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 GNPTGQ9UJJ9 305 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 JAG2Q9Y219 1238 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 CACNA1FO60840 1977 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 FSHRP23945 695 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HUNKP57058 714 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 POU5F1Q01860 360 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 C3orf62Q6ZUJ4 267 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 DNAJC1Q96KC8 554 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 TEKT5Q96M29 485 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 RBM15Q96T37 977 aaKnown RBP eCLIP9.2□□□□□ -0.942e-7■■■■■ 27.1
NIPBL-202ENST00000448238 ABHD10Q9NUJ1 306 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 CLN6Q9NWW5 311 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 UBQLN1Q9UMX0 589 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 UGT1A5P35504 534 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 LRRC20Q8TCA0 184 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 TNFAIP8L1Q8WVP5 186 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 NUDT5Q9UKK9 219 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 ASXL1Q8IXJ9 1541 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 PPEF2O14830 753 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 CNTFP26441 200 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 CDKL1Q00532 357 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 PDK1Q15118 436 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 SMU1Q2TAY7 513 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 SLC22A9Q8IVM8 553 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 POC5Q8NA72 575 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 TESCQ96BS2 214 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 EEF2KMTQ96G04 330 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF560Q96MR9 790 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 TRIM36Q9NQ86 728 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 ADPRHL2Q9NX46 363 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 DMTF1Q9Y222 760 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 CHURC1-FNTBB4DL54 471 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 LDLRP01130 860 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 P4HBP07237 508 aaKnown RBP9.19□□□□□ -0.94
NIPBL-202ENST00000448238 ME3Q16798 604 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 MRNIPQ6NTE8 343 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 CYB5D1Q6P9G0 228 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 FAM228AQ86W67 206 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 DEPDC4Q8N2C3 294 aa9.19□□□□□ -0.94
NIPBL-202ENST00000448238 RAB6BQ9NRW1 208 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms