RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 OLFM1Q99784 485 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 SLC2A11Q9BYW1 496 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 STN1Q9H668 368 aaKnown RBP19.93■□□□□ 0.78
HMGA1-205ENST00000447654 SLC38A7Q9NVC3 462 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 SLC17A7Q9P2U7 560 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 RABGAP1Q9Y3P9 1069 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-205ENST00000447654 H0YJX3 145 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 FAM189A1O60320 539 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 LPXNO60711 386 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 KLHL2O95198 593 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 KLF1Q13351 362 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-205ENST00000447654 APOPT1Q96IL0 206 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 LRGUKQ96M69 825 aa19.93■□□□□ 0.78
HMGA1-205ENST00000447654 GLIS2Q9BZE0 524 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-205ENST00000447654 CNOT11Q9UKZ1 510 aaKnown RBP19.93■□□□□ 0.78
HMGA1-205ENST00000447654 COL2A1P02458 1487 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-205ENST00000447654 CAPNS1P04632 268 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 TCF7P36402 384 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-205ENST00000447654 CASP4P49662 377 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 CASP5P51878 434 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 SLC12A3P55017 1021 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 SLC18A2Q05940 514 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 TICAM1Q8IUC6 712 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 TSPAN14Q8NG11 270 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 PPP4R1Q8TF05 950 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 RANBP9Q96S59 729 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 SHOC2Q9UQ13 582 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 DNM3Q9UQ16 869 aa19.92■□□□□ 0.78
HMGA1-205ENST00000447654 FOXN3O00409 490 aaPredicted RBP19.91■□□□□ 0.78
HMGA1-205ENST00000447654 FAM155BO75949 473 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 SPDYE2Q495Y8 402 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 ZFP1Q6P2D0 407 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 CENPSQ8N2Z9 138 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.91■□□□□ 0.782e-8■■■■■ 27.2
HMGA1-205ENST00000447654 PHF12Q96QT6 1004 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 ATAD3AQ9NVI7 634 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 HERC5Q9UII4 1024 aaKnown RBP19.91■□□□□ 0.78
HMGA1-205ENST00000447654 RABGEF1Q9UJ41 708 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 CDH22Q9UJ99 828 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 B3GNT3Q9Y2A9 372 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 SPTLC1O15269 473 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 CYP26A1O43174 497 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 BGNP21810 368 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 PSMC6P62333 389 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 TRIML2Q8N7C3 387 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 FAM151AQ8WW52 585 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 PLEKHA8Q96JA3 519 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 ACSS3Q9H6R3 686 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 DKK3Q9UBP4 350 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 POMPQ9Y244 141 aa19.91■□□□□ 0.78
HMGA1-205ENST00000447654 FUCA1P04066 466 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 EIF2B2P49770 351 aaKnown RBP19.9■□□□□ 0.78
HMGA1-205ENST00000447654 C21orf59P57076 290 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 AP3B2Q13367 1082 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 ZYXQ15942 572 aaKnown RBP19.9■□□□□ 0.78
HMGA1-205ENST00000447654 DRICH1Q6PGQ1 229 aaPredicted RBP19.9■□□□□ 0.78
HMGA1-205ENST00000447654 POTEGQ6S5H5 508 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 SLC20A1Q8WUM9 679 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 SLC5A5Q92911 643 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 GLT8D2Q9H1C3 349 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 TUT1Q9H6E5 874 aaKnown RBP19.9■□□□□ 0.78
HMGA1-205ENST00000447654 APPL1Q9UKG1 709 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 ZBTB21Q9ULJ3 1066 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 C6orf222P0C671 652 aaPredicted RBP19.9■□□□□ 0.78
HMGA1-205ENST00000447654 WASHC5Q12768 1159 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 CNBD2Q96M20 576 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 CLEC11AQ9Y240 323 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 TMX2Q9Y320 296 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 PCDHB13Q9Y5F0 798 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 SNX9Q9Y5X1 595 aa19.9■□□□□ 0.78
HMGA1-205ENST00000447654 IQANK1A0A1B0GTG1 560 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 PRR5-ARHGAP8B1AHC4 643 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 EIF3DO15371 548 aaKnown RBP eCLIP19.89■□□□□ 0.773e-11■□□□□ 8.3
HMGA1-205ENST00000447654 MT-ND3P03897 115 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 SREBF1P36956 1147 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 ERFP50548 548 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 COPAP53621 1224 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 ARHGAP8P85298 464 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 HSF5Q4G112 596 aaPredicted RBP19.89■□□□□ 0.77
HMGA1-205ENST00000447654 IYDQ6PHW0 289 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 CATSPER3Q86XQ3 398 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 TERB1Q8NA31 727 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 HM13Q8TCT9 377 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 NSMCE3Q96MG7 304 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 KCNK16Q96T55 309 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 PAFAH2Q99487 392 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 BCAS3Q9H6U6 928 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 PGAP2Q9UHJ9 254 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 BCAP29Q9UHQ4 241 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 DOLKQ9UPQ8 538 aa19.89■□□□□ 0.77
HMGA1-205ENST00000447654 C2orf71A6NGG8 1288 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 FAM47E-STBD1D6RA91 191 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 MEIS1O00470 390 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 NDUFB5O43674 189 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 BMP10O95393 424 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 SPATA31C1P0DKV0 1188 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 TRPC1P48995 793 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 MYL7Q01449 175 aa19.88■□□□□ 0.77
HMGA1-205ENST00000447654 CIAPIN1Q6FI81 312 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms