RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 CCNT1O60563 726 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 EXOC3O60645 756 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 RNASEH1O60930 286 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 DAB1O75553 588 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 MAP3K6O95382 1288 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 BMP10O95393 424 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 FTCDO95954 541 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ABCB1P08183 1280 aaPredicted RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 HSMCR30P0CW71 290 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 KRT13P13646 458 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 HADHAP40939 763 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 PRKCIP41743 596 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 MTIF2P46199 727 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 PPM1FP49593 454 aaPredicted RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 ST3GAL1Q11201 340 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CDC16Q13042 620 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 SPARCL1Q14515 664 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 DSC3Q14574 896 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TGFBIQ15582 683 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 OASLQ15646 514 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 C21orf62-AS1Q17RA5 79 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CCDC58Q4VC31 144 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 PRR16Q569H4 304 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 PERM1Q5SV97 790 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 SPOPLQ6IQ16 392 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 OGFOD2Q6N063 350 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TRAF7Q6Q0C0 670 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 USP43Q70EL4 1123 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 UNC13DQ70J99 1090 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 FRA10AC1Q70Z53 315 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ZNF598Q86UK7 904 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 CDH24Q86UP0 819 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TICAM1Q8IUC6 712 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 LRRC47Q8N1G4 583 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 SLC26A7Q8TE54 656 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 HERVK_113Q902F9 699 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 HSPH1Q92598 858 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 SEPT8Q92599 483 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ZNF75CPQ92670 426 aaPredicted RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 OSBP2Q969R2 916 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TIFAQ96CG3 184 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CNBD2Q96M20 576 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 GLT1D1Q96MS3 346 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 DEPDC7Q96QD5 511 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 LLPHQ9BRT6 129 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 MKNK1Q9BUB5 465 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TUBB6Q9BUF5 446 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ZSCAN5AQ9BUG6 496 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.88□□□□□ -1.95
LIG4-203ENST00000442234 LACRTQ9GZZ8 138 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 BOLA2Q9H3K6 86 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 EBF3Q9H4W6 596 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ZNF576Q9H609 170 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 NHEJ1Q9H9Q4 299 aaPredicted RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 LIN28AQ9H9Z2 209 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 NCOA5Q9HCD5 579 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 GDF3Q9NR23 364 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 SACM1LQ9NTJ5 587 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 HMG20BQ9P0W2 317 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 KLHL3Q9UH77 587 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TUBE1Q9UJT0 475 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ARHGAP26Q9UNA1 814 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 IFT52Q9Y366 437 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 DUSP10Q9Y6W6 482 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 KDM6AO15550 1401 aaPredicted RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 C1orf232A0A0U1RR37 186 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 A0A1W2PQ72 361 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ILVBLA1L0T0 632 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 B8ZZF3 427 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 COBLO75128 1261 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 USP12O75317 370 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 MYO1DO94832 1006 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TNFAIP8O95379 198 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 NPPAP01160 153 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ALDH2P05091 517 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CALB1P05937 261 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 RARBP10826 455 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 BRAFP15056 766 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CFL1P23528 166 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 RPS12P25398 132 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 LONP1P36776 959 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 PTPN9P43378 593 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CLK2P49760 499 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 PMS1P54277 932 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 PLTPP55058 493 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 DAB2P98082 770 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 ARHGAP4P98171 946 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 GBE1Q04446 702 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 SCRN3Q0VDG4 424 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CSTF3Q12996 717 aaKnown RBP2.88□□□□□ -1.95
LIG4-203ENST00000442234 STX3Q13277 289 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TRPC3Q13507 836 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 MORC3Q14149 939 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 EFTUD2Q15029 972 aaKnown RBP eCLIP2.88□□□□□ -1.95
LIG4-203ENST00000442234 RPS6KA1Q15418 735 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 STILQ15468 1287 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 PTPROQ16827 1216 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 CEP55Q53EZ4 464 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 DCAF6Q58WW2 860 aa2.88□□□□□ -1.95
LIG4-203ENST00000442234 TNNI3KQ59H18 835 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms