RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 IL18RAPO95256 599 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 INHAP05111 366 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 CA4P22748 312 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 ADORA2BP29275 332 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 AFF1P51825 1210 aaKnown RBP9.89□□□□□ -0.83
CUX1-206ENST00000437600 YARSP54577 528 aaKnown RBP9.89□□□□□ -0.83
CUX1-206ENST00000437600 C1QTNF8P60827 252 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 OVGP1Q12889 678 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 CGB2Q6NT52 195 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 ANKS4BQ8N8V4 417 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 CCDC63Q8NA47 563 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 WNT8BQ93098 351 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 ZFP42Q96MM3 310 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 PGLYRP2Q96PD5 576 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 CCDC77Q9BR77 488 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 TMEM109Q9BVC6 243 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 CEP41Q9BYV8 373 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 XPNPEP3Q9NQH7 507 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 KLC4Q9NSK0 619 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 PCDHGC3Q9UN70 934 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 STK38LQ9Y2H1 464 aa9.89□□□□□ -0.83
CUX1-206ENST00000437600 H7C0C1 242 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 GABBR2O75899 941 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 LSM8O95777 96 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 HOXD8P13378 290 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 DARSP14868 501 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 MAN1A1P33908 653 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 ATP5OP48047 213 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 KCNJ2P63252 427 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 ENPEPQ07075 957 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 MGAT5Q09328 741 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 SNX17Q15036 470 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 MTFR1Q15390 333 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 HIF1AQ16665 826 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 HADHQ16836 314 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 FAM187BQ17R55 369 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 TRPM8Q7Z2W7 1104 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.88□□□□□ -0.83
CUX1-206ENST00000437600 FITM2Q8N6M3 262 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 SLC35B2Q8TB61 432 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 FBF1Q8TES7 1133 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 PRCCQ92733 491 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 CENPTQ96BT3 561 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 PITPNM3Q9BZ71 974 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 TRABDQ9H4I3 376 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 NKIRAS1Q9NYS0 192 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 XPO7Q9UIA9 1087 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.88□□□□□ -0.83
CUX1-206ENST00000437600 COL1A2P08123 1366 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 SZT2Q5T011 3432 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 CLUHO75153 1309 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 TRUB2O95900 331 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 HMGCRP04035 888 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 PFKMP08237 780 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 RARBP10826 455 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 LCP1P13796 627 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 CCDC130P13994 396 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 CTU1Q7Z7A3 348 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 TTC30AQ86WT1 665 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 PALM2Q8IXS6 379 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 FUKQ8N0W3 1084 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 BCO2Q9BYV7 579 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 STMN4Q9H169 189 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 BAIAP2L1Q9UHR4 511 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 MFHAS1Q9Y4C4 1052 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 RRN3P2A6NIE6 340 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 A8MUI8 341 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 SEPT4O43236 478 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 F7P08709 466 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 GRIA1P42261 906 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 CPT1AP50416 773 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 PURAQ00577 322 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 GOLGA7BQ2TAP0 167 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 TWF2Q6IBS0 349 aaKnown RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 SLC27A1Q6PCB7 646 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 SYDE1Q6ZW31 735 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 IFNLR1Q8IU57 520 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 PYROXD2Q8N2H3 581 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 RNF169Q8NCN4 708 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 ARRDC4Q8NCT1 418 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 ZNF518BQ9C0D4 1074 aa9.88□□□□□ -0.83
CUX1-206ENST00000437600 MAGED2Q9UNF1 606 aaPredicted RBP9.88□□□□□ -0.83
CUX1-206ENST00000437600 CCDC189A1A4V9 331 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 MED7O43513 233 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 DUSP11O75319 330 aaKnown RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 ASGR1P07306 291 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 TAC1P20366 129 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 ELK3P41970 407 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 DPYSL3Q14195 570 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 KCNA10Q16322 511 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 CCDC14Q49A88 953 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 NOTUMQ6P988 496 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 CENPUQ71F23 418 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 YTHDF3Q7Z739 585 aaKnown RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 ZNF410Q86VK4 478 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 CCDC110Q8TBZ0 833 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 CKAP2Q8WWK9 683 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 ASB7Q9H672 318 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.87□□□□□ -0.834e-7■■■□□ 17.6
CUX1-206ENST00000437600 C17orf102A2RUQ5 167 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms