RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 BBS12Q6ZW61 710 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 ZC3H18Q86VM9 953 aaKnown RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 SLC4A11Q8NBS3 891 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 TMEM40Q8WWA1 233 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 KLF6Q99612 283 aaPredicted RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 NOD2Q9HC29 1040 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 PSMC3IPQ9P2W1 217 aaPredicted RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 LAMA3Q16787 3333 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 WDR91A4D1P6 747 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 MGRN1O60291 552 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 ASMTLO95671 621 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 KRT4P19013 534 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 MGAT5Q09328 741 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 NPNTQ6UXI9 565 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 C3orf62Q6ZUJ4 267 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 ECHDC2Q86YB7 292 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 PALM2Q8IXS6 379 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 TTC13Q8NBP0 860 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 FBXO36Q8NEA4 188 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 SPATA18Q8TC71 538 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 APOL6Q9BWW8 343 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 MAK16Q9BXY0 300 aaKnown RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 GCOM2Q9BZD3 368 aaPredicted RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 LHX5Q9H2C1 402 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 XPO7Q9UIA9 1087 aaKnown RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 TNFSF13BQ9Y275 285 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 HES2Q9Y543 173 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 CLUHO75153 1309 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 KLHL33A6NCF5 533 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 CFAP73A6NFT4 308 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 MCF2LO15068 1137 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 TSPAN1O60635 241 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 GPR32O75388 356 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 IL18RAPO95256 599 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 RBP3P10745 1247 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 GNAT1P11488 350 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 NQO1P15559 274 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 GBP2P32456 591 aaPredicted RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 GEMIN4P57678 1058 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 SLC1A5Q15758 541 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 SEPT7Q16181 437 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 RAB6CQ53S08 254 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 GBP7Q8N8V2 638 aaPredicted RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 ATP11CQ8NB49 1132 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 LRRC8CQ8TDW0 803 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 FBF1Q8TES7 1133 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 TMEM176AQ96HP8 235 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 CFHR5Q9BXR6 569 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 RAB6CQ9H0N0 254 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 RXFP1Q9HBX9 757 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 HMX1Q9NP08 348 aaPredicted RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.13□□□□□ -0.633e-6■□□□□ 8.8
CUX1-205ENST00000425244 GRID1Q9ULK0 1009 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 PHTF1Q9UMS5 762 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 USP18Q9UMW8 372 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 SMG5Q9UPR3 1016 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 CHMP2BQ9UQN3 213 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 NOD1Q9Y239 953 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 FARP1Q9Y4F1 1045 aaPredicted RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 CASP8AP2Q9UKL3 1982 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 SMIM35A0A1B0GVV1 85 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 MBLAC1A4D2B0 266 aaPredicted RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 TMEM63AO94886 807 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 PHBP35232 272 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 CDH6P55285 790 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 BNIP1Q12981 228 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 AMHR2Q16671 573 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 GALNTL6Q49A17 601 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 OR6B2Q6IFH4 312 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 DARS2Q6PI48 645 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 C1orf228Q6PIY5 440 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 PCGF5Q86SE9 256 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 RNF180Q86T96 592 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 TDRPQ86YL5 185 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 WNT8BQ93098 351 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 HPDLQ96IR7 371 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 BCO2Q9BYV7 579 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 ADAMTS10Q9H324 1103 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 C12orf65Q9H3J6 166 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 PDZD7Q9H5P4 517 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 UBN1Q9NPG3 1134 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 TRMT13Q9NUP7 481 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 PRKAG3Q9UGI9 489 aa11.13□□□□□ -0.63
CUX1-205ENST00000425244 PIN4Q9Y237 131 aaKnown RBP11.13□□□□□ -0.63
CUX1-205ENST00000425244 CILPO75339 1184 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 MAP3K6O95382 1288 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 RGS7P49802 495 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 ADAM17P78536 824 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 ATP11AP98196 1134 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 C15orf59Q2T9L4 293 aaPredicted RBP11.12□□□□□ -0.63
CUX1-205ENST00000425244 SCYL2Q6P3W7 929 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 LVRNQ6Q4G3 990 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 PDIK1LQ8N165 341 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 PEBP4Q96S96 227 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 PAFAH2Q99487 392 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 TRIM6Q9C030 488 aaPredicted RBP11.12□□□□□ -0.63
CUX1-205ENST00000425244 WDR35Q9P2L0 1181 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 GTF2IRD1Q9UHL9 959 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 RABGEF1Q9UJ41 708 aa11.12□□□□□ -0.63
CUX1-205ENST00000425244 H7C0C1 242 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms