RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 WDR44Q5JSH3 913 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 LMBRD2Q68DH5 695 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 PPP1R2P3Q6NXS1 205 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 BORAQ6PGQ7 559 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ZCCHC23Q6ZST2 131 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 BBS12Q6ZW61 710 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ZNF554Q86TJ5 538 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 HPS6Q86YV9 775 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 AHI1Q8N157 1196 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 GPD1LQ8N335 351 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ARHGEF1Q92888 912 aaKnown RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 SIKE1Q9BRV8 207 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SLC13A1Q9BZW2 595 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SUDS3Q9H7L9 328 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 XAB2Q9HCS7 855 aaKnown RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 THAP1Q9NVV9 213 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PKD2L1Q9P0L9 805 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 BIRC5O15392 142 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SIN3BO75182 1162 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 KLHL2O95198 593 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 NRLP54845 237 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 MYBPC1Q00872 1141 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CREB5Q02930 508 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 STX3Q13277 289 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CUL2Q13617 745 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 DPYSL3Q14195 570 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CRY2Q49AN0 593 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 HSP90AA5PQ58FG0 334 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ISLR2Q6UXK2 745 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ANO5Q75V66 913 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PPM1NQ8N819 430 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 NIPA2Q8N8Q9 360 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 FAM71DQ8N9W8 422 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 STN1Q9H668 368 aaKnown RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 EHMT1Q9H9B1 1298 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 TMEM165Q9HC07 324 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 APOBEC3GQ9HC16 384 aaKnown RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 CNTN6Q9UQ52 1028 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PCDHB4Q9Y5E5 795 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SPDYE2BA6NHP3 402 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SPDYE16A6NNV3 312 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 SPDYE6P0CI01 402 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ITGAXP20702 1163 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SERPINB8P50452 374 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 WNT7BP56706 349 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 JAG1P78504 1218 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PLOD1Q02809 727 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 TCP10Q12799 353 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PIGHQ14442 188 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 TAZQ16635 292 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SPDYE2Q495Y8 402 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 TCHHL1Q5QJ38 904 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 FAM102BQ5T8I3 360 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 TDRD10Q5VZ19 366 aaKnown RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 HHIPL2Q6UWX4 724 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SH3BP5LQ7L8J4 393 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ARCQ7LC44 396 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 POLNQ7Z5Q5 900 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 MAP7D3Q8IWC1 876 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CTAGE3PQ8IX95 158 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 NUP93Q8N1F7 819 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 FBXW8Q8N3Y1 598 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ABTB1Q969K4 478 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 FAM213AQ9BRX8 229 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CYP4F11Q9HBI6 524 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PLAC1Q9HBJ0 212 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 KCNH7Q9NS40 1196 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 PI4KBQ9UBF8 816 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 RAB26Q9ULW5 256 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 AGTPBP1Q9UPW5 1226 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 LTBP1Q14766 1721 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 MAGEB3O15480 346 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 AVILO75366 819 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 TNFAIP8O95379 198 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 VNN1O95497 513 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 CRTAMO95727 393 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 C4BPAP04003 597 aaKnown RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 HNRNPCP07910 306 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP54-204ENST00000422491 ATP6V1B1P15313 513 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 CACNB3P54284 484 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 SLC25A11Q02978 314 aaKnown RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 CBLBQ13191 982 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 KCNJ11Q14654 390 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 UGCGQ16739 394 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 SH3D19Q5HYK7 790 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 DNAJC24Q6P3W2 148 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 ZNF410Q86VK4 478 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 DEFB107AQ8IZN7 70 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 PQLC1Q8N2U9 271 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 PIWIL2Q8TC59 973 aaKnown RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 APBB2Q92870 758 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 APOL6Q9BWW8 343 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 C6orf203Q9P0P8 240 aaPredicted RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 BTBD7Q9P203 1132 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 ZBTB21Q9ULJ3 1066 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 ARHGAP10A1A4S6 786 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 TRMUO75648 421 aaKnown RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 GSRP00390 522 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 PRKCHP24723 683 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 CRHR1P34998 444 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms