RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DUSP6Q16828 381 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 PRPF38BQ5VTL8 546 aaKnown RBP14.94□□□□□ -0.02
SF3B1-204ENST00000414963 SPATA31D4Q6ZUB0 917 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 SCD5Q86SK9 330 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 ITIH5Q86UX2 942 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 SYCE1Q8N0S2 351 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 ARHGAP18Q8N392 663 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 SLC7A14Q8TBB6 771 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 GPR152Q8TDT2 470 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 GIPC2Q8TF65 315 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 OVCA2Q8WZ82 227 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 NDRG1Q92597 394 aaKnown RBP14.94□□□□□ -0.02
SF3B1-204ENST00000414963 PSMG2Q969U7 264 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 MCEEQ96PE7 176 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 ALS2CR12Q96Q35 445 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 CNPY3Q9BT09 278 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 DDX23Q9BUQ8 820 aaKnown RBP14.94□□□□□ -0.02
SF3B1-204ENST00000414963 TRIM7Q9C029 511 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 TLE6Q9H808 572 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 POPDC2Q9HBU9 364 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 CAPN6Q9Y6Q1 641 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 PATJQ8NI35 1801 aa14.94□□□□□ -0.02
SF3B1-204ENST00000414963 TRANK1O15050 2925 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 KIF2AO00139 706 aaPredicted RBP14.93□□□□□ -0.02
SF3B1-204ENST00000414963 RFXAPO00287 272 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 DAB1O75553 588 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 PALMO75781 387 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ZMYND10O75800 440 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 PROSCO94903 275 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 LTFP02788 710 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 FYNP06241 537 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 C8AP07357 584 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 HNRNPA1P09651 372 aaKnown RBP eCLIP14.93□□□□□ -0.021e-13■■■■□ 20.2
SF3B1-204ENST00000414963 ZDHHC11BP0C7U3 371 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 POU3F3P20264 500 aaPredicted RBP14.93□□□□□ -0.02
SF3B1-204ENST00000414963 NOS2P35228 1153 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 FLT3P36888 993 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 MATKP42679 507 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 SLC1A1P43005 524 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 PTPN9P43378 593 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 PSEN1P49768 467 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 GNG11P61952 73 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 OGDHQ02218 1023 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ZNF252P-AS1Q0IIN9 211 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 MTMR3Q13615 1198 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 KCNC3Q14003 757 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ZNF569Q5MCW4 686 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 SNX30Q5VWJ9 437 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 BSPRYQ5W0U4 402 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 TRNP1Q6NT89 227 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 DNAJB7Q7Z6W7 309 aaPredicted RBP14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ADGRD2Q7Z7M1 963 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ZNF276Q8N554 614 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 RXFP2Q8WXD0 754 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 PPP2R3CQ969Q6 453 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 NT5C3BQ969T7 300 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ABCC13Q9NSE7 274 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.93□□□□□ -0.028e-19■□□□□ 8
SF3B1-204ENST00000414963 CLIC5Q9NZA1 410 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 ALG6Q9Y672 507 aa14.93□□□□□ -0.02
SF3B1-204ENST00000414963 PER2O15055 1255 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 PDGFRAP16234 1089 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 EPCAMP16422 314 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 GPD1P21695 349 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 PPP3CCP48454 512 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 RNASE9P60153 205 aaKnown RBP14.92□□□□□ -0.02
SF3B1-204ENST00000414963 YWHAGP61981 247 aaKnown RBP eCLIP14.92□□□□□ -0.02
SF3B1-204ENST00000414963 TAF10Q12962 218 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 MESDQ14696 234 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 CCDC14Q49A88 953 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 ELMSAN1Q6PJG2 1045 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 TMEM184AQ6ZMB5 413 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 HFE2Q6ZVN8 426 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 BNIPLQ7Z465 357 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 DAAM2Q86T65 1068 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 EMC1Q8N766 993 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 PDZD8Q8NEN9 1154 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 CENPIQ92674 756 aaPredicted RBP14.92□□□□□ -0.02
SF3B1-204ENST00000414963 GOLGA1Q92805 767 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 FBXO32Q969P5 355 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 FAM149B1Q96BN6 582 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 BTBD6Q96KE9 485 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 SLITRK1Q96PX8 696 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 NCAPGQ9BPX3 1015 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 MAN1C1Q9NR34 630 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 TMEM51Q9NW97 253 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 ZDHHC7Q9NXF8 308 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 RRN3Q9NYV6 651 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 UXTQ9UBK9 157 aaPredicted RBP14.92□□□□□ -0.02
SF3B1-204ENST00000414963 HCFC2Q9Y5Z7 792 aa14.92□□□□□ -0.02
SF3B1-204ENST00000414963 COL4A4P53420 1690 aaPredicted RBP14.92□□□□□ -0.02
SF3B1-204ENST00000414963 GRAP2O75791 330 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 ENDOD1O94919 500 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 CSPG5O95196 566 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 LRG1P02750 347 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 PGFP49763 221 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 SLC25A52Q3SY17 297 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 PPM1LQ5SGD2 360 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 RBM23Q86U06 439 aaKnown RBP14.91□□□□□ -0.02
SF3B1-204ENST00000414963 NT5DC3Q86UY8 548 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms