RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 COL13A1Q5TAT6 717 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 SH3PXD2AQ5TCZ1 1133 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 SEL1L2Q5TEA6 688 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 OTUD1Q5VV17 481 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 TXNRD3NBQ6F5E7 133 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 PM20D1Q6GTS8 502 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 AADACL2Q6P093 401 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 HFE2Q6ZVN8 426 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 CYP4V2Q6ZWL3 525 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 BNIPLQ7Z465 357 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 SCN4BQ8IWT1 228 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 DEFB106AQ8N104 65 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 VPS52Q8N1B4 723 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 ATAD1Q8NBU5 361 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 SCAMP5Q8TAC9 235 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 FAM172AQ8WUF8 416 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 GOLGA1Q92805 767 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 FAM149B1Q96BN6 582 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 PEBP4Q96S96 227 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 SEPT5Q99719 369 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 CLSTN3Q9BQT9 956 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 DDX23Q9BUQ8 820 aaKnown RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 ADAM33Q9BZ11 813 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 RAB6CQ9H0N0 254 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 ZBP1Q9H171 429 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 CRISPLD1Q9H336 500 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 POPDC2Q9HBU9 364 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 KLHL11Q9NVR0 708 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS41-204ENST00000413141 TTC7AQ9ULT0 858 aaPredicted RBP6.96□□□□□ -1.3
VPS41-204ENST00000413141 USP3Q9Y6I4 520 aa6.96□□□□□ -1.3
VPS41-204ENST00000413141 LINC01553A4QN01 128 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 CCDC85CA6NKD9 419 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 SOAT2O75908 522 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 TRUB2O95900 331 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 FYNP06241 537 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 KRT7P08729 469 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 CTSAP10619 480 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 ATF6P18850 670 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 DNAJB2P25686 324 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 MIPP30301 263 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 OR1D2P34982 312 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 CTNNB1P35222 781 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NOS2P35228 1153 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 MAGEA10P43363 369 aaPredicted RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 SULT1E1P49888 294 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 HDAC4P56524 1084 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 ATP11AP98196 1134 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 CREMQ03060 361 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 KRT17Q04695 432 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 IFRD2Q12894 506 aaPredicted RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 CLUL1Q15846 466 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 HADHQ16836 314 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 SMTNL2Q2TAL5 461 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 SLC25A52Q3SY17 297 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 MGAT5BQ3V5L5 792 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 DCAF6Q58WW2 860 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 TEX35Q5T0J7 233 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 SDHAF4Q5VUM1 108 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 RSRC2Q7L4I2 434 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 BEND5Q7L4P6 421 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 STRADAQ7RTN6 431 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 GPR65Q8IYL9 337 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 KLHL23Q8NBE8 558 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NOA1Q8NC60 698 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 STKLD1Q8NE28 680 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 SPATA4Q8NEY3 305 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 EXD1Q8NHP7 514 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 AUTS2Q8WXX7 1259 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 CENPIQ92674 756 aaPredicted RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 NT5C3BQ969T7 300 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 ACSF2Q96CM8 615 aaPredicted RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 RBM41Q96IZ5 413 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 SPATA17Q96L03 361 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 TBCBQ99426 244 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NAP1L3Q99457 506 aaPredicted RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 NPY6RQ99463 290 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NCAPGQ9BPX3 1015 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 TRIM62Q9BVG3 475 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 PLVAPQ9BX97 442 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 ZWILCHQ9H900 591 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NGRNQ9NPE2 291 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS41-204ENST00000413141 MRPL17Q9NRX2 175 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 RBM12Q9NTZ6 932 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 DDX56Q9NY93 547 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 CALCOCO1Q9P1Z2 691 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 FNIP2Q9P278 1114 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 HSFX1Q9UBD0 423 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS41-204ENST00000413141 AFF4Q9UHB7 1163 aaKnown RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 PCSK1NQ9UHG2 260 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 STAP1Q9ULZ2 295 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 USP18Q9UMW8 372 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 NAALADL1Q9UQQ1 740 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 SLC27A5Q9Y2P5 690 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 RWDD3Q9Y3V2 267 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 V9GYY5 206 aaPredicted RBP6.95□□□□□ -1.3
VPS41-204ENST00000413141 GBF1Q92538 1859 aa6.95□□□□□ -1.3
VPS41-204ENST00000413141 hCG_1818297A0A087WSY0 165 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms