RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CD48P09326 243 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CCDC159P0C7I6 412 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 KCNA4P22459 653 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 TMEM62Q0P6H9 643 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 AP1B1Q10567 949 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 MFSD5Q6N075 450 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 SLC9A9Q8IVB4 645 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 UNC45BQ8IWX7 931 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 GALNT4Q8N4A0 578 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 ICA1LQ8NDH6 482 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 NLRP7Q8WX94 980 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 OMA1Q96E52 524 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 BORCS6Q96GS4 357 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 SLC38A10Q9HBR0 1119 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 ANKEF1Q9NU02 776 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 ASNSD1Q9NWL6 643 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 MYH7BA7E2Y1 1941 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 EP400Q96L91 3159 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 GOLGA8QA0A0J9YX86 632 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 GOLGA8OA6NCC3 632 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 GOLGA8NF8WBI6 632 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CYB561D2O14569 222 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 MED7O43513 233 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 EDF1O60869 148 aaKnown RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 PRKCBP05771 671 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 TFDP2Q14188 446 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 MORF4L2Q15014 288 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 C15orf59Q2T9L4 293 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 RIBC1Q8N443 379 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CCNYL1Q8N7R7 359 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 PYDC1Q8WXC3 89 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 LRGUKQ96M69 825 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 BCAP29Q9UHQ4 241 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CLEC11AQ9Y240 323 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 COL16A1Q07092 1604 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 XPOTO43592 962 aaKnown RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 ONECUT3O60422 494 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 PGM3O95394 542 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 LCP1P13796 627 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 OSBPP22059 807 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 SDC4P31431 198 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 RPL22P35268 128 aaKnown RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 TMC2Q8TDI7 906 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 SLITRK1Q96PX8 696 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 DCUN1D5Q9BTE7 237 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 DMAP1Q9NPF5 467 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 DDX56Q9NY93 547 aaKnown RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 WARS2Q9UGM6 360 aaKnown RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 FBXO9Q9UK97 447 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 SH3GLB1Q9Y371 365 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CSADQ9Y600 493 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 COMMD10Q9Y6G5 202 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 ANKRD36CQ5JPF3 1778 aa12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CAPN1P07384 714 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 IMPDH2P12268 514 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 NOMO3P69849 1222 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 GCNT1Q02742 428 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 HIC1Q14526 733 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 TAF5Q15542 800 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 JOSD2Q8TAC2 188 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 LMO3Q8TAP4 145 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 CDHR1Q96JP9 859 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 TUBB6Q9BUF5 446 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 NIF3L1Q9GZT8 377 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 PAIP1Q9H074 479 aaKnown RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 WWP1Q9H0M0 922 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 TJP2Q9UDY2 1190 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 LRCH1Q9Y2L9 728 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 RIPK3Q9Y572 518 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 NR2E3Q9Y5X4 410 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 CHD4Q14839 1912 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SHANK3Q9BYB0 1731 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SMNDC1O75940 238 aaKnown RBP eCLIP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 ITGB3P05106 788 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SNRPAP09012 282 aaKnown RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 FDX1P10109 184 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 P4HA1P13674 534 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 MSX2P35548 267 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 MAGEA8P43361 318 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 CNTN2Q02246 1040 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 PDK4Q16654 411 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 TCHHL1Q5QJ38 904 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 WLSQ5T9L3 541 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 RNF169Q8NCN4 708 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 UCMAQ8WVF2 138 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SRPK1Q96SB4 655 aaKnown RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 APOL2Q9BQE5 337 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 YIPF2Q9BWQ6 316 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 MRPL4Q9BYD3 311 aaKnown RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 PXMP2Q9NR77 195 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 EURLQ9NYK6 297 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 NDC80O14777 642 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 SEC24DO94855 1032 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 EGFRP00533 1210 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 CLCN3P51790 818 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 GDF10P55107 478 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 DENND1BQ6P3S1 775 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 DACT3Q96B18 629 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-206ENST00000405805 PGBD4Q96DM1 585 aa12.37□□□□□ -0.43
HMGB1-206ENST00000405805 BTBD10Q9BSF8 475 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms