RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ATXN2Q99700 1313 aaKnown RBP19.22■□□□□ 0.67
USP48-204ENST00000400301 C3orf70A6NLC5 250 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 ALOX15BO15296 676 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 FAM200BP0CF97 657 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 STRCP1A6NGW2 1772 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 SDR42E2A6NKP2 422 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 FASTKD1Q53R41 847 aaKnown RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 RNF135Q8IUD6 432 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 GTF3C2Q8WUA4 911 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 PRCCQ92733 491 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 CCDC97Q96F63 343 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 LRRC4CQ9HCJ2 640 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 AFG3L2Q9Y4W6 797 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 LOC100653049A0A140TA62 436 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 DNM1LO00429 736 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 NVLO15381 856 aaKnown RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 KRT34O76011 436 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 SETSIPP0DME0 302 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 TGM2P21980 687 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 POLE2P56282 527 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 FBXO47Q5MNV8 452 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 GJC2Q5T442 439 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 SLC39A4Q6P5W5 647 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 RAB44Q7Z6P3 723 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 DNAJC9Q8WXX5 260 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 FBXL18Q96ME1 805 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 GPR88Q9GZN0 384 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 BATF3Q9NR55 127 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 DDIT4Q9NX09 232 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 EGFRP00533 1210 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 HIRAP54198 1017 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 PTP4A2Q12974 167 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 GRIK4Q16099 956 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 RABGAP1LQ5R372 815 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 BTBD8Q5XKL5 378 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 CEP41Q9BYV8 373 aa19.21■□□□□ 0.67
USP48-204ENST00000400301 C20orf96Q9NUD7 363 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 MAFBQ9Y5Q3 323 aaPredicted RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.21■□□□□ 0.67
USP48-204ENST00000400301 H0YGN5 161 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 NEMP1O14524 444 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 LGALS2P05162 132 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 PTPN4P29074 926 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 LRGUKQ96M69 825 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 SRPK1Q96SB4 655 aaKnown RBP19.2■□□□□ 0.66
USP48-204ENST00000400301 NFS1Q9Y697 457 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 PLCH1Q4KWH8 1693 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 CNTNAP1P78357 1384 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 EPHB2P29323 1055 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 ZNF143P52747 638 aaPredicted RBP19.2■□□□□ 0.66
USP48-204ENST00000400301 BST2Q10589 180 aaKnown RBP19.2■□□□□ 0.66
USP48-204ENST00000400301 UNC45BQ8IWX7 931 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 KIAA0319LQ8IZA0 1049 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 OR6P1Q8NGX9 317 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 KAT2BQ92831 832 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 APOPT1Q96IL0 206 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 GMLQ99445 158 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 PIH1D1Q9NWS0 290 aaKnown RBP19.2■□□□□ 0.66
USP48-204ENST00000400301 A0A1W2PPM1 405 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 C6orf222P0C671 652 aaPredicted RBP19.2■□□□□ 0.66
USP48-204ENST00000400301 TAC1P20366 129 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 AQP5P55064 265 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 USP10Q14694 798 aaKnown RBP19.2■□□□□ 0.66
USP48-204ENST00000400301 GPC2Q8N158 579 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 SHCBP1LQ9BZQ2 653 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 STARD13Q9Y3M8 1113 aa19.2■□□□□ 0.66
USP48-204ENST00000400301 CETPP11597 493 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 CYP2B6P20813 491 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 AMPD1P23109 780 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 AKAP5P24588 427 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 PMLP29590 882 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 SLC6A3Q01959 620 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 KIRREL3Q8IZU9 778 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 GSDMBQ8TAX9 411 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 CPXM1Q96SM3 734 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 NIFKQ9BYG3 293 aaKnown RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 TRIM4Q9C037 500 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 SLC24A3Q9HC58 644 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 VNN1O95497 513 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 TRUB2O95900 331 aaKnown RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 FASTKD3Q14CZ7 662 aaKnown RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 RASA2Q15283 850 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 RCN1Q15293 331 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 PDK4Q16654 411 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 LBX2Q6XYB7 198 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 SPATS2LQ9NUQ6 558 aaKnown RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 ACO1P21399 889 aaKnown RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 KCNT2Q6UVM3 1135 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 PLPPR4Q7Z2D5 763 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 CACNB2Q08289 660 aaPredicted RBP19.19■□□□□ 0.66
USP48-204ENST00000400301 TRIM67Q6ZTA4 783 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 FAM183BPQ6ZVS7 135 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 ADGRF2Q8IZF7 708 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 TASP1Q9H6P5 420 aa19.19■□□□□ 0.66
USP48-204ENST00000400301 CFHP08603 1231 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 ACSS3Q9H6R3 686 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 PFDN4Q9NQP4 134 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 LRCH4O75427 683 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 KLHL2O95198 593 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms