RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PSAPL1Q6NUJ1 521 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 C12orf40Q86WS4 652 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 DDX42Q86XP3 938 aaKnown RBP eCLIP30.22■■■□□ 2.43
HMGB1-205ENST00000399494 ALLCQ8N6M5 410 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 TMEM174Q8WUU8 243 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 USP24Q9UPU5 2620 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 GOLGA6L22H0YM25 854 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 KAT7O95251 611 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 IFRD2Q12894 506 aaPredicted RBP30.21■■■□□ 2.43
HMGB1-205ENST00000399494 CAMK4Q16566 473 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 TXNDC5Q8NBS9 432 aaKnown RBP30.21■■■□□ 2.43
HMGB1-205ENST00000399494 OVCA2Q8WZ82 227 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 KCNK16Q96T55 309 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 TSG101Q99816 390 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 TBC1D14Q9P2M4 693 aa30.21■■■□□ 2.43
HMGB1-205ENST00000399494 CHORDC1Q9UHD1 332 aaPredicted RBP30.21■■■□□ 2.43
HMGB1-205ENST00000399494 E2F8A0AVK6 867 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 SGK1O00141 431 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 KHNYNO15037 678 aaKnown RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 RTN3O95197 1032 aaPredicted RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 KLF8O95600 359 aaPredicted RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 APODP05090 189 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 TIE1P35590 1138 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 KIR2DL1P43626 348 aaPredicted RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 CASP4P49662 377 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 NFIL3Q16649 462 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 HSF5Q4G112 596 aaPredicted RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 COBLL1Q53SF7 1204 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 TTC30AQ86WT1 665 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 SYAP1Q96A49 352 aaPredicted RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 ZFRQ96KR1 1074 aaKnown RBP30.2■■■□□ 2.43
HMGB1-205ENST00000399494 IL37Q9NZH6 218 aa30.2■■■□□ 2.43
HMGB1-205ENST00000399494 NUP205Q92621 2012 aa30.2■■■□□ 2.42
HMGB1-205ENST00000399494 THADAQ6YHU6 1953 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 PATE3B3GLJ2 98 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 BIN1O00499 593 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 COCHO43405 550 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 ALDH1A2O94788 518 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 ADH1CP00326 375 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 GRIA2P42262 883 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 TNFRSF4P43489 277 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 CDH8P55286 799 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 EDRF1Q3B7T1 1238 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 DAB2IPQ5VWQ8 1189 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 PAQR9Q6ZVX9 377 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 CYP2U1Q7Z449 544 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 PDZD8Q8NEN9 1154 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 PLEKHO2Q8TD55 490 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 FBXO32Q969P5 355 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 VRTNQ9H8Y1 702 aa30.19■■■□□ 2.42
HMGB1-205ENST00000399494 CDX4O14627 284 aaPredicted RBP30.18■■■□□ 2.42
HMGB1-205ENST00000399494 TNFRSF10BO14763 440 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 GIPC1O14908 333 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 ADH5P11766 374 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 P2RY2P41231 377 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 PPP1R2P41236 205 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 DHPSP49366 369 aaPredicted RBP30.18■■■□□ 2.42
HMGB1-205ENST00000399494 IRX4P78413 519 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 ADAM9Q13443 819 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 ZCWPW2Q504Y3 356 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 LY6G5CQ5SRR4 150 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 SNX30Q5VWJ9 437 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 SCAMP5Q8TAC9 235 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 RLN3Q8WXF3 142 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 ARHGEF4Q9NR80 690 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 LMBRD1Q9NUN5 540 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 ZFHX4Q86UP3 3567 aa30.18■■■□□ 2.42
HMGB1-205ENST00000399494 PSMA7O14818 248 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 PHACTR2O75167 634 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 NOVA1P51513 510 aaKnown RBP30.17■■■□□ 2.42
HMGB1-205ENST00000399494 PHTF2Q8N3S3 785 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 PARD3BQ8TEW8 1205 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 OTUB2Q96DC9 234 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 SMYD3Q9H7B4 428 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 POLMQ9NP87 494 aaPredicted RBP30.17■■■□□ 2.42
HMGB1-205ENST00000399494 TMEM9BQ9NQ34 198 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 MYOFQ9NZM1 2061 aa30.17■■■□□ 2.42
HMGB1-205ENST00000399494 ADAM23O75077 832 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 PSMC2P35998 433 aaKnown RBP30.16■■■□□ 2.42
HMGB1-205ENST00000399494 GAD2Q05329 585 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 KDSRQ06136 332 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 EOGTQ5NDL2 527 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 HECTD3Q5T447 861 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 FAM186BQ8IYM0 893 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 FRMD1Q8N878 549 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 ZDHHC4Q9NPG8 344 aa30.16■■■□□ 2.42
HMGB1-205ENST00000399494 LRRIQ3A6PVS8 624 aaPredicted RBP30.15■■■□□ 2.42
HMGB1-205ENST00000399494 PALM2-AKAP2B1ALY0 433 aaPredicted RBP30.15■■■□□ 2.42
HMGB1-205ENST00000399494 MAPK13O15264 365 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 KRT13P13646 458 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 AP3M2P53677 418 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 CLDN10P78369 228 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 BIRC3Q13489 604 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 MORC3Q14149 939 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 FAM35AQ86V20 835 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 WHAMMQ8TF30 809 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 PIGKQ92643 395 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 MED10Q9BTT4 135 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 CCSER2Q9H7U1 834 aa30.15■■■□□ 2.42
HMGB1-205ENST00000399494 KIAA1468Q9P260 1216 aa30.15■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms