RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 IQSEC2Q5JU85 1478 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 DLC1Q96QB1 1528 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ASMTLO95671 621 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 LSM8O95777 96 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ITGA4P13612 1032 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ARHGEF7Q14155 803 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ARHGAP17Q68EM7 881 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 EFCAB12Q6NXP0 572 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM9CQ8IZT9 166 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 CHST13Q8NET6 341 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 HES6Q96HZ4 224 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 DEPDC7Q96QD5 511 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 EPS8L2Q9H6S3 715 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ZNF70Q9UC06 446 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TRMT6Q9UJA5 497 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 HEATR9A2RTY3 570 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TADA2AO75478 443 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ITGB3P05106 788 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 FCGR1AP12314 374 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 RRM1P23921 792 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TWF1Q12792 350 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 SGO1Q5FBB7 561 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 CACHD1Q5VU97 1274 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 CHSY1Q86X52 802 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 RIN3Q8TB24 985 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 SUN5Q8TC36 379 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 DIS3LQ8TF46 1054 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 CNPY3Q9BT09 278 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 CCDC28BQ9BUN5 200 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 MUC3BQ9H195 1237 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 KCTD10Q9H3F6 313 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 PCDH9Q9HC56 1237 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 OSGEPQ9NPF4 335 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TMEM51Q9NW97 253 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TRIM13O60858 407 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 PMPCBO75439 489 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ZRANB3Q5FWF4 1079 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 PRR5LQ6MZQ0 368 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 DENND5BQ6ZUT9 1274 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 SEMA4AQ9H3S1 761 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 UBQLN1Q9UMX0 589 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 KRT87PA6NCN2 255 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PIK3CDO00329 1044 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC25A27O95847 323 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC2A3P11169 496 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 OASLQ15646 514 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 NUDT18Q6ZVK8 323 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 LRRC71Q8N4P6 559 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 ZNF333Q96JL9 665 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 APOL5Q9BWW9 433 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 NAALADL1Q9UQQ1 740 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CDC42BPAQ5VT25 1732 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CPA3P15088 417 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 SREBF1P36956 1147 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PPP3CCP48454 512 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 R3HDM1Q15032 1099 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PPP4R4Q6NUP7 873 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 TMPRSS6Q8IU80 811 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 MTMR8Q96EF0 704 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PDCD10Q9BUL8 212 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PIDD1Q9HB75 910 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM153AQ9UHL3 310 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 SAC3D1A6NKF1 404 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 M0QYT0 321 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 RIPK2O43353 540 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 ST8SIA6P61647 398 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 TP53BP2Q13625 1128 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 NOTUMQ6P988 496 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 IYDQ6PHW0 289 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 ADCK2Q7Z695 626 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CD302Q8IX05 232 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 DDIT4Q9NX09 232 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 WWOXQ9NZC7 414 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 RUVBL2Q9Y230 463 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CARD8Q9Y2G2 431 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 LRCH1Q9Y2L9 728 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 KCNQ2O43526 872 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 F9P00740 461 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 SERPIND1P05546 499 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 BGNP21810 368 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 S100A1P23297 94 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 ZNF512Q96ME7 567 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CGRRF1Q99675 332 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 AGXT2Q9BYV1 514 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 ATP9AO75110 1047 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PRLP01236 227 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 RBP1P09455 135 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 MAPRE1Q15691 268 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CLEC16AQ2KHT3 1053 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 TMC3Q7Z5M5 1100 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 PPP2R3CQ969Q6 453 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 CBWD1Q9BRT8 395 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 NCKIPSDQ9NZQ3 722 aa10.57□□□□□ -0.72
LIMCH1-203ENST00000396595 RRN3P2A6NIE6 340 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 RNF103O00237 685 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 DYNC1LI2O43237 492 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 AKAP3O75969 853 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms