RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 MFSD5Q6N075 450 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 FLCNQ8NFG4 579 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 ZNF473Q8WTR7 871 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 APBB2Q92870 758 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 GPR62Q9BZJ7 368 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 CXCL16Q9H2A7 254 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 SP110Q9HB58 689 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 EPB41L5Q9HCM4 733 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 KLC4Q9NSK0 619 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 ALG6Q9Y672 507 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PPP1R37O75864 691 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 DDHD2O94830 711 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TIMP1P01033 207 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TUFMP49411 452 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PLTPP55058 493 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TAF10Q12962 218 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PCSK7Q16549 785 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TTMPQ5BVD1 217 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TRIM72Q6ZMU5 477 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 ARHGEF18Q6ZSZ5 1173 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 CREG2Q8IUH2 290 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 FAM126BQ8IXS8 530 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TSEN2Q8NCE0 465 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 P3H4Q92791 437 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 MFSD14AQ96MC6 490 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 CYP3A43Q9HB55 503 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 FBXL21Q9UKT6 434 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 NFU1Q9UMS0 254 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 RCCD1A6NED2 376 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 SART1O43290 800 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 HEXIM1O94992 359 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 KRT14P02533 472 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 C8AP07357 584 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 GPD1P21695 349 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TWF1Q12792 350 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 TAF5Q15542 800 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 KDM7AQ6ZMT4 941 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 NLRP14Q86W24 1093 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 GDPD5Q8WTR4 605 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 CAVIN3Q969G5 261 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PCED1BQ96HM7 432 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 IP6K2Q9UHH9 426 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PHF24Q9UPV7 400 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 MCM3APO60318 1980 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ATXN2Q99700 1313 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 PABPN1LA6NDY0 278 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 AGRPO00253 132 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 TBX18O95935 607 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 PRLRP16471 622 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 MAGEA10P43363 369 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 GPR15P49685 360 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 MYBPC2Q14324 1141 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 CCDC157Q569K6 752 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ZC3H12AQ5D1E8 599 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 FAXCQ5TGI0 409 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ACAD10Q6JQN1 1059 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 PID1Q7Z2X4 250 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 C17orf80Q9BSJ5 609 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ASAH2Q9NR71 780 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 VANGL2Q9ULK5 521 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 SSX2IPQ9Y2D8 614 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 IGKV6D-21A0A0A0MT36 114 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 XYLBO75191 536 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 EOMESO95936 686 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 C4BPAP04003 597 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 KCNA5P22460 613 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 RPL9P32969 192 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 MAN1A1P33908 653 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 STILQ15468 1287 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 SNCBQ16143 134 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 EFHC1Q5JVL4 640 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 RNF135Q8IUD6 432 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 BBS5Q8N3I7 341 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 FEZF2Q8TBJ5 459 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 EMID1Q96A84 441 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 TWNKQ96RR1 684 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 CCT8L2Q96SF2 557 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 TMEM209Q96SK2 561 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ELOVL4Q9GZR5 314 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ACTR5Q9H9F9 607 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 CD248Q9HCU0 757 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 IL23AQ9NPF7 189 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 LMCD1Q9NZU5 365 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 MTRF1LQ9UGC7 380 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 PCDHGC5Q9Y5F6 944 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 CITO14578 2027 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 KNTC1P50748 2209 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 HMGB1P1B2RPK0 211 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 DDX3XO00571 662 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 VCPP55072 806 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 YWHAZP63104 245 aaKnown RBP10.73□□□□□ -0.69
COL6A3-205ENST00000392004 BBS9Q3SYG4 887 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 EPS8L1Q8TE68 723 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 EPAS1Q99814 870 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 MARCH2Q9P0N8 246 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 RNF14Q9UBS8 474 aa10.73□□□□□ -0.69
COL6A3-205ENST00000392004 ZBTB42B2RXF5 422 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 NPR3P17342 541 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 KPNA1P52294 538 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms