RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ATP5OP48047 213 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 NDST1P52848 882 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ROR1Q01973 937 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ACVR2BQ13705 512 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 DGKDQ16760 1214 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 KLHL38Q2WGJ6 581 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 ZNF792Q3KQV3 632 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 LRRC23Q53EV4 343 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-204ENST00000392003 FAM47CQ5HY64 1035 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 SCYL2Q6P3W7 929 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 TRABD2AQ86V40 505 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 NT5DC4Q86YG4 428 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 SPATA18Q8TC71 538 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 MAML1Q92585 1016 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 MCRS1Q96EZ8 462 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 TWNKQ96RR1 684 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 DNAI2Q9GZS0 605 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 VRTNQ9H8Y1 702 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 HESX1Q9UBX0 185 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 C2CD2Q9Y426 696 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 IKBKGQ9Y6K9 419 aa10.06□□□□□ -0.8
COL6A3-204ENST00000392003 APOC4-APOC2K7ER74 178 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 APOC2P02655 101 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 RPL22P35268 128 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 FASTKD3Q14CZ7 662 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 SLC10A6Q3KNW5 377 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 IFNLR1Q8IU57 520 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 SLC35B4Q969S0 331 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 FAM124BQ9H5Z6 455 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 PAPOLBQ9NRJ5 636 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 MKS1Q9NXB0 559 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 HMGXB4Q9UGU5 601 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 IQCF3P0C7M6 154 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 CYP2B6P20813 491 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 STIP1P31948 543 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 PCK1P35558 622 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 MSH2P43246 934 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 ZNF143P52747 638 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 GEMIN4P57678 1058 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 SNCBQ16143 134 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 CDO1Q16878 200 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 PRAMEF19Q5SWL8 479 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 BZW1Q7L1Q6 419 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 FAM71DQ8N9W8 422 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 CMASQ8NFW8 434 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 LRRC8CQ8TDW0 803 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 MS4A4AQ96JQ5 239 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 AP5M1Q9H0R1 490 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 EVPLQ92817 2033 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 CFAP73A6NFT4 308 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 C3orf70A6NLC5 250 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 GPD2P43304 727 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 GABRB2P47870 512 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 YARSP54577 528 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 MPP2Q14168 576 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 PKN2Q16513 984 aaKnown RBP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 CATSPER4Q7RTX7 472 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 PPTC7Q8NI37 304 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 RXFP2Q8WXD0 754 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 C10orf88Q9H8K7 445 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL6A3-204ENST00000392003 TSPAN16Q9UKR8 245 aa10.05□□□□□ -0.8
COL6A3-204ENST00000392003 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-204ENST00000392003 PIK3R2O00459 728 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 RASSF9O75901 435 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 LINGO3P0C6S8 592 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 RNASELQ05823 741 aaKnown RBP10.04□□□□□ -0.8
COL6A3-204ENST00000392003 XRCC4Q13426 336 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 FAM110CQ1W6H9 321 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 TAPT1Q6NXT6 567 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 CYB5D1Q6P9G0 228 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 C3orf62Q6ZUJ4 267 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 FUKQ8N0W3 1084 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 C4orf33Q8N1A6 199 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 ARFGAP1Q8N6T3 406 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 PPP1R13LQ8WUF5 828 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 MAML3Q96JK9 1138 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 NGRNQ9NPE2 291 aaKnown RBP10.04□□□□□ -0.8
COL6A3-204ENST00000392003 ABCF3Q9NUQ8 709 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 SETD4Q9NVD3 440 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 XPO7Q9UIA9 1087 aaKnown RBP10.04□□□□□ -0.8
COL6A3-204ENST00000392003 FESP07332 822 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 CD48P09326 243 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 ALDH3A1P30838 453 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 PSMC4P43686 418 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 GRIK4Q16099 956 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 AMHR2Q16671 573 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 GOLGA7BQ2TAP0 167 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 DCAF4L1Q3SXM0 396 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 BOLA3Q53S33 107 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 CHADLQ6NUI6 762 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 LCLAT1Q6UWP7 414 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 FAM47EQ6ZV65 393 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 ZC3H18Q86VM9 953 aaKnown RBP10.04□□□□□ -0.8
COL6A3-204ENST00000392003 UNC45BQ8IWX7 931 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 CPT1BQ92523 772 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 GORASP1Q9BQQ3 440 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 APOL6Q9BWW8 343 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 SLC45A1Q9Y2W3 748 aa10.04□□□□□ -0.8
COL6A3-204ENST00000392003 E5RJQ4 531 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms