RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 VPS35Q96QK1 796 aa9□□□□□ -0.97
LIG3-202ENST00000378526 UQCC2Q9BRT2 126 aa9□□□□□ -0.97
LIG3-202ENST00000378526 FRMD8P1Q9BZ68 369 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 PABPC3Q9H361 631 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 GRIP1Q9Y3R0 1128 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ALG5Q9Y673 324 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PLK4O00444 970 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CFBP00751 764 aa9□□□□□ -0.97
LIG3-202ENST00000378526 RAG1P15918 1043 aa9□□□□□ -0.97
LIG3-202ENST00000378526 NR4A1P22736 598 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ARL3P36405 182 aa9□□□□□ -0.97
LIG3-202ENST00000378526 IL18R1Q13478 541 aa9□□□□□ -0.97
LIG3-202ENST00000378526 DEFB107AQ8IZN7 70 aa9□□□□□ -0.97
LIG3-202ENST00000378526 MREGQ8N565 214 aa9□□□□□ -0.97
LIG3-202ENST00000378526 DDX17Q92841 729 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 ITIH6Q6UXX5 1313 aa9□□□□□ -0.97
LIG3-202ENST00000378526 C9IYK1 514 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 GLRA3O75311 464 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 OR6B1O95007 311 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 HSD3B1P14060 373 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 ZNF3P17036 446 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 GJA9P57773 515 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CHRNA2Q15822 529 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CDO1Q16878 200 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 FUKQ8N0W3 1084 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 MMGT1Q8N4V1 131 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 ZNF615Q8N8J6 731 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CNKSR1Q969H4 720 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 EYA3Q99504 573 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 TSEN34Q9BSV6 310 aaKnown RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 EMILIN3Q9NT22 766 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 FAM50BQ9Y247 325 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 WDR17Q8IZU2 1322 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SOAT2O75908 522 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 PSAPP07602 524 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 ZNF14P17017 642 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 GSTM5P46439 218 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 HAGHLQ6PII5 290 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 FANCBQ8NB91 859 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 NEDD1Q8NHV4 660 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 ERP44Q9BS26 406 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 PKP3Q9Y446 797 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 FARP1Q9Y4F1 1045 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 PCYT1BQ9Y5K3 369 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 RTN2O75298 545 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 METTL18O95568 372 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 RPS8P62241 208 aaKnown RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 POLA2Q14181 598 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 ANO7Q6IWH7 933 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 IFNL2Q8IZJ0 200 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 USP38Q8NB14 1042 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 IRF2BPLQ9H1B7 796 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SP110Q9HB58 689 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 RBMX2Q9Y388 322 aaKnown RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 FAM25EA8MYX2 175 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 PGRMC2O15173 223 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 WFS1O76024 890 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SERPINF2P08697 491 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 TFE3P19532 575 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 TGM2P21980 687 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 HSD17B3P37058 310 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 NT5C2P49902 561 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SRPK1Q96SB4 655 aaKnown RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 RIBC2Q9H4K1 309 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CLIC5Q9NZA1 410 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 WHRNQ9P202 907 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 PCDHA4Q9UN74 947 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 KIF28PB7ZC32 967 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 VPS4BO75351 444 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 NADKO95544 446 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 SPARCP09486 303 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 GRK3P35626 688 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CPA2P48052 419 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 POU4F1Q01851 419 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 FAM47AQ5JRC9 791 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 DEF8Q6ZN54 512 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 MTDHQ86UE4 582 aaKnown RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 LRRC34Q8IZ02 419 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 LINC00301Q8NCQ3 95 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SLC7A3Q8WY07 619 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 NSMCE2Q96MF7 247 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 PHF12Q96QT6 1004 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CD274Q9NZQ7 290 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 CENPCQ03188 943 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 LLGL1Q15334 1064 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 PACS1Q6VY07 963 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SMYD4Q8IYR2 804 aaPredicted RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 EMC1Q8N766 993 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 TBC1D15Q8TC07 691 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 SSX3Q99909 188 aa8.99□□□□□ -0.97
LIG3-202ENST00000378526 ZC3H12CQ9C0D7 883 aaKnown RBP8.99□□□□□ -0.97
LIG3-202ENST00000378526 AIPO00170 330 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 STAT3P40763 770 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 KCNMA1Q12791 1236 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 USP10Q14694 798 aaKnown RBP8.98□□□□□ -0.97
LIG3-202ENST00000378526 EFHC2Q5JST6 749 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 OTUD7BQ6GQQ9 843 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 PI16Q6UXB8 463 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CHSY1Q86X52 802 aa8.98□□□□□ -0.97
LIG3-202ENST00000378526 CHPFQ8IZ52 775 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms