RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PPFIA2O75334 1257 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 MYZAPP0CAP1 466 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 RPL9P32969 192 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 FLT3P36888 993 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 SARNPP82979 210 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 DHX9Q08211 1270 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 IFT88Q13099 833 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 LIN9Q5TKA1 542 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 FAM171A1Q5VUB5 890 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 NAIF1Q69YI7 327 aaPredicted RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 C12orf50Q8NA57 414 aaPredicted RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 ARMC2Q8NEN0 867 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 UBLCP1Q8WVY7 318 aaPredicted RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 RSPH1Q8WYR4 309 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 C18orf8Q96DM3 657 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 DDX27Q96GQ7 796 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 UROC1Q96N76 676 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 C11orf84Q9BUA3 381 aaPredicted RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 XYLT2Q9H1B5 865 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 EBF2Q9HAK2 575 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 SPTBN5Q9NRC6 3674 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 ITGA11Q9UKX5 1188 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 RWDD3Q9Y3V2 267 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 PCDHB4Q9Y5E5 795 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 ATG2AQ2TAZ0 1938 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 TKTP29401 623 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 RBP5P82980 135 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 GUCY1A3Q02108 690 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 KRT17Q04695 432 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 TRPC3Q13507 836 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 RIPK1Q13546 671 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 SGSM1Q2NKQ1 1148 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 RTP2Q5QGT7 225 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 PLPP4Q5VZY2 271 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 KCTD16Q68DU8 428 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 CCDC137Q6PK04 289 aaKnown RBP14.96□□□□□ -0.01
HMGA1-203ENST00000374116 TMEM270Q6UE05 265 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 MON1BQ7L1V2 547 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 DEFB123Q8N688 67 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 MICAL1Q8TDZ2 1067 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 CPA5Q8WXQ8 436 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 HPDLQ96IR7 371 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 TXLNGYQ9BZA5 131 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 IMPG2Q9BZV3 1241 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 TRIM31Q9BZY9 425 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 HOMER3Q9NSC5 361 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 ZDHHC18Q9NUE0 388 aa14.96□□□□□ -0.01
HMGA1-203ENST00000374116 FSCN2O14926 492 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 RPL17P18621 184 aaKnown RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 RRM1P23921 792 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 GNA15P30679 374 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 PPM1AP35813 382 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 COILP38432 576 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 ATP1A2P50993 1020 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 NOMO3P69849 1222 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 PLCB3Q01970 1234 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 ADCY2Q08462 1091 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 ADGRE1Q14246 886 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 WDR72Q3MJ13 1102 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 PRSS55Q6UWB4 352 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 DSTYKQ6XUX3 929 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 DDX53Q86TM3 631 aaKnown RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 ZDHHC14Q8IZN3 488 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 SH2D3CQ8N5H7 860 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 RBBP8NLQ8NC74 664 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 CCHCR1Q8TD31 782 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 MAIP1Q8WWC4 291 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 RSRC1Q96IZ7 334 aaKnown RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 SH3GL3Q99963 347 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 TCF25Q9BQ70 676 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 FAM129AQ9BZQ8 928 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 NXF1Q9UBU9 619 aaKnown RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 POLIQ9UNA4 740 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 SNX9Q9Y5X1 595 aa14.95□□□□□ -0.02
HMGA1-203ENST00000374116 PRRC2BQ5JSZ5 2229 aaKnown RBP14.95□□□□□ -0.02
HMGA1-203ENST00000374116 SF3B1O75533 1304 aaKnown RBP eCLIP14.94□□□□□ -0.024e-6■■■■■ 34.5
HMGA1-203ENST00000374116 KPNA7A9QM74 516 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 HCRTO43612 131 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 RB1P06400 928 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 CFHP08603 1231 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 RARAP10276 462 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 IGFBP4P22692 258 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 TAF6P49848 677 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 EIF3BP55884 814 aaKnown RBP14.94□□□□□ -0.02
HMGA1-203ENST00000374116 ZNF844Q08AG5 666 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 SIX1Q15475 284 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-203ENST00000374116 TTC27Q6P3X3 843 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 SCARA5Q6ZMJ2 495 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 TMC7Q7Z402 723 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 PHF13Q86YI8 300 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-203ENST00000374116 CPNE8Q86YQ8 564 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 RNF217Q8TC41 542 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 ZNF483Q8TF39 744 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-203ENST00000374116 SENP8Q96LD8 212 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 SAMD11Q96NU1 681 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 TSPAN18Q96SJ8 248 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 NIF3L1Q9GZT8 377 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 KDM4CQ9H3R0 1056 aa14.94□□□□□ -0.02
HMGA1-203ENST00000374116 LRRC19Q9H756 370 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms