RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TLR5O60602 858 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 CD44P16070 742 aaKnown RBP22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 ACO1P21399 889 aaKnown RBP22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 PPP1R2P41236 205 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 SRSF5Q13243 272 aaKnown RBP22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 LPAL2Q16609 132 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 ISM2Q6H9L7 571 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 CAMKK1Q8N5S9 505 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 SLC4A11Q8NBS3 891 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 RPLP0P6Q8NHW5 317 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 CCDC26Q8TAB7 109 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 SLC35C1Q96A29 364 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 JAKMIP2Q96AA8 810 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 HEXIM2Q96MH2 286 aaKnown RBP22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 ARID3AQ99856 593 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 CYLDQ9NQC7 956 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 POLR3BQ9NW08 1133 aaPredicted RBP22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 CIZ1Q9ULV3 898 aaPredicted RBP22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 SH3BP1Q9Y3L3 701 aa22.91■■□□□ 1.26
CCDC28B-201ENST00000373602 CYP26A1O43174 497 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 GADD45BO75293 160 aaPredicted RBP22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 KIF11P52732 1056 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 RAD23BP54727 409 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 SYT13Q7L8C5 426 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 TMEM176AQ96HP8 235 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 NACA2Q9H009 215 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 METTL14Q9HCE5 456 aaKnown RBP22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 OSER1Q9NX31 292 aa22.9■■□□□ 1.26
CCDC28B-201ENST00000373602 K7EQS6 105 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 ADH1CP00326 375 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 BMP6P22004 513 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 TGM1P22735 817 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 EIF2DP41214 584 aaKnown RBP22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 PXNP49023 591 aaPredicted RBP22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 ARHGAP17Q68EM7 881 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 USP33Q8TEY7 942 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 WBP2Q969T9 261 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 ACDQ96AP0 544 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 CEP63Q96MT8 703 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 KLF16Q9BXK1 252 aaPredicted RBP22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 SPTBN4Q9H254 2564 aa22.89■■□□□ 1.25
CCDC28B-201ENST00000373602 MYO16Q9Y6X6 1858 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 KIAA1549LQ6ZVL6 1849 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 TBX18O95935 607 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 ADH5P11766 374 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 ATP5C1P36542 298 aaKnown RBP22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 SLC6A11P48066 632 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 CUL2Q13617 745 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 MORC3Q14149 939 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 LY6G5CQ5SRR4 150 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 FOXR2Q6PJQ5 311 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 CCDC186Q7Z3E2 898 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 BBS7Q8IWZ6 715 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 RMDN1Q96DB5 314 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 PNKPQ96T60 521 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 NMUR1Q9HB89 426 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 USP3Q9Y6I4 520 aa22.88■■□□□ 1.25
CCDC28B-201ENST00000373602 A0A1W2PQH9 124 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 PPP1R3GB7ZBB8 358 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 GREM1O60565 184 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 RETP07949 1114 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 GAD2Q05329 585 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 DMC1Q14565 340 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 TTI2Q6NXR4 508 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 KLHDC10Q6PID8 442 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 HTR3DQ70Z44 454 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 CEP68Q76N32 757 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 C12orf40Q86WS4 652 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 GAB3Q8WWW8 586 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 HHIPQ96QV1 700 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 UBXN6Q9BZV1 441 aa22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.87■■□□□ 1.25
CCDC28B-201ENST00000373602 A0A0A0MRY4 1105 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 PMM2O15305 246 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 IRF1P10914 325 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 RARGP13631 454 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 FMO5P49326 533 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 PSEN1P49768 467 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 KLHL10Q6JEL2 608 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 ZNF276Q8N554 614 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 NELFBQ8WX92 580 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 PARD6AQ9NPB6 346 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 MYOFQ9NZM1 2061 aa22.86■■□□□ 1.25
CCDC28B-201ENST00000373602 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 RPP40O75818 363 aaKnown RBP22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 KAT7O95251 611 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 APODP05090 189 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 SEC13P55735 322 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 YWHAEP62258 255 aaKnown RBP22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 MRPS21P82921 87 aaKnown RBP22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 MESP2Q0VG99 397 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 CCDC40Q4G0X9 1142 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 SCD5Q86SK9 330 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 FAM160A2Q8N612 972 aaPredicted RBP22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 UBR7Q8N806 425 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 ANKRD52Q8NB46 1076 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 SPHK2Q9NRA0 654 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 EBF1Q9UH73 591 aa22.85■■□□□ 1.25
CCDC28B-201ENST00000373602 NAGPAQ9UK23 515 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms