RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 AMHR2Q16671 573 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 SMTNL2Q2TAL5 461 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ATAD3BQ5T9A4 648 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 AGAP9Q5VTM2 703 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 FOXR1Q6PIV2 292 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ERLEC1Q96DZ1 483 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 SERAC1Q96JX3 654 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 AMACRQ9UHK6 382 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 POLG2Q9UHN1 485 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PCDHB12Q9Y5F1 795 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 SUPT7LO94864 414 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ABCB1P08183 1280 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-202ENST00000358808 KCNA3P22001 575 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 CCT8P50990 548 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF786Q8N393 782 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 FAM118BQ9BPY3 351 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PACSIN1Q9BY11 444 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 TRPM5Q9NZQ8 1165 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 DPP7Q9UHL4 492 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 TIPRLO75663 272 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 USP11P51784 963 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ORC2Q13416 577 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-202ENST00000358808 CHI3L2Q15782 390 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 RSBN1Q5VWQ0 802 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-202ENST00000358808 SETD3Q86TU7 594 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-202ENST00000358808 OXER1Q8TDS5 423 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ROGDIQ9GZN7 287 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 KDM6AO15550 1401 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-202ENST00000358808 FAM220BPB1ANY3 271 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 MTSS1O43312 755 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 HOXA2O43364 376 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PRMT3O60678 531 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 MSH3P20585 1137 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 FGFR2P21802 821 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 FNTAP49354 379 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PEG10Q86TG7 708 aaKnown RBP10.51□□□□□ -0.73
CLIP1-202ENST00000358808 FAM136AQ96C01 138 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 GRID1Q9ULK0 1009 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 ADGRB1O14514 1584 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 STK36Q9NRP7 1315 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 RRN3P2A6NIE6 340 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 TRIM24O15164 1050 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 GPR182O15218 404 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PHF2O75151 1096 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 NDUFS2O75306 463 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 RHOCP08134 193 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PRR29P0C7W0 189 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 CLUP10909 449 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PNPLA4P41247 253 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 DDI2Q5TDH0 399 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 MCOLN3Q8TDD5 553 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 IL1RAPL1Q9NZN1 696 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 PP2D1A8MPX8 630 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 H3BMM5 538 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 AP3D1O14617 1153 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 SLC25A27O95847 323 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 ATP6V1B2P21281 511 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 RPS12P25398 132 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 C1DQ13901 141 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 LRRC74BQ6ZQY2 392 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DEFB128Q7Z7B8 93 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 UNC45BQ8IWX7 931 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 TRPC4APQ8TEL6 797 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 VPS33AQ96AX1 596 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 GPRASP2Q96D09 838 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 C10orf88Q9H8K7 445 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 VPS51Q9UID3 782 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DAGLAQ9Y4D2 1042 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CNTNAP4Q9C0A0 1308 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 M0QYT0 321 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 SLC16A3O15427 465 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 SNRPAP09012 282 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PTPN3P26045 913 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 GTF2A2P52657 109 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 IL2P60568 153 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CAMK1Q14012 370 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CTXN3Q4LDR2 81 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 MROH9Q5TGP6 573 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DAB2IPQ5VWQ8 1189 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CNPY4Q8N129 248 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CACTIN-AS1Q8N1I8 211 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 SLC35G2Q8TBE7 412 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 OSCP1Q8WVF1 389 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 KLF6Q99612 283 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 RUVBL2Q9Y230 463 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 LOC100653049A0A140TA62 436 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 FOXP2O15409 715 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CNOT3O75175 753 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 KRT34O76011 436 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PRKCEQ02156 737 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 GRIK3Q13003 919 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 TRIM16LQ309B1 348 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 NECAB2Q7Z6G3 386 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 BTBD9Q96Q07 612 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PIGUQ9H490 435 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 RSAD1Q9HA92 442 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 LY9Q9HBG7 655 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DBR1Q9UK59 544 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF521Q96K83 1311 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms