RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 NMUR1Q9HB89 426 aa19.4■□□□□ 0.7
CLN3-202ENST00000355477 PNPLA8Q9NP80 782 aa19.4■□□□□ 0.7
CLN3-202ENST00000355477 TLR8Q9NR97 1041 aaKnown RBP19.4■□□□□ 0.7
CLN3-202ENST00000355477 MYO18AQ92614 2054 aaKnown RBP19.4■□□□□ 0.7
CLN3-202ENST00000355477 TLR5O60602 858 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 LILRB5O75023 590 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 NFATC1O95644 943 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 CYP17A1P05093 508 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 DMWDQ09019 674 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 NR1H3Q13133 447 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 ARHGAP17Q68EM7 881 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 TRIM59Q8IWR1 403 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 KIAA1958Q8N8K9 716 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 SUMF1Q8NBK3 374 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 EML5Q05BV3 1969 aa19.39■□□□□ 0.69
CLN3-202ENST00000355477 A0A1W2PQH9 124 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 E2F8A0AVK6 867 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 K7ESF4 209 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 DRD1P21728 446 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 OPRD1P41143 372 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 MARSP56192 900 aaKnown RBP19.38■□□□□ 0.69
CLN3-202ENST00000355477 KCNH2Q12809 1159 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 DHCR24Q15392 516 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 RHBDF2Q6PJF5 856 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 SCD5Q86SK9 330 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 TTC30AQ86WT1 665 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 DDX42Q86XP3 938 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-202ENST00000355477 ANKRD52Q8NB46 1076 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 KAT5Q92993 513 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 CD101Q93033 1021 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 FAM126AQ9BYI3 521 aaPredicted RBP19.38■□□□□ 0.69
CLN3-202ENST00000355477 CYLDQ9NQC7 956 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 USP3Q9Y6I4 520 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 DMXL1Q9Y485 3027 aa19.38■□□□□ 0.69
CLN3-202ENST00000355477 SLC9A3R1O14745 358 aaPredicted RBP19.37■□□□□ 0.69
CLN3-202ENST00000355477 RNF40O75150 1001 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 PAPSS2O95340 614 aaPredicted RBP19.37■□□□□ 0.69
CLN3-202ENST00000355477 GNA14O95837 355 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 IRF1P10914 325 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 TBXAS1P24557 533 aaPredicted RBP19.37■□□□□ 0.69
CLN3-202ENST00000355477 PPP2R5DQ14738 602 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 CCDC186Q7Z3E2 898 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 NT5C1BQ96P26 610 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 KLF16Q9BXK1 252 aaPredicted RBP19.37■□□□□ 0.69
CLN3-202ENST00000355477 UBXN6Q9BZV1 441 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 NACA2Q9H009 215 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 CLSTN2Q9H4D0 955 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-202ENST00000355477 POLR3BQ9NW08 1133 aaPredicted RBP19.37■□□□□ 0.69
CLN3-202ENST00000355477 RWDD2AQ9UIY3 292 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 NUDT5Q9UKK9 219 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 SDK1Q7Z5N4 2213 aa19.37■□□□□ 0.69
CLN3-202ENST00000355477 SPAG17Q6Q759 2223 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 CHURC1-FNTBB4DL54 471 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 RNF225M0QZC1 329 aaPredicted RBP19.36■□□□□ 0.69
CLN3-202ENST00000355477 TULP2O00295 520 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 P4HA2O15460 535 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 RARGP13631 454 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 ATP5C1P36542 298 aaKnown RBP19.36■□□□□ 0.69
CLN3-202ENST00000355477 FNTBP49356 437 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 NRLP54845 237 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 YWHAEP62258 255 aaKnown RBP19.36■□□□□ 0.69
CLN3-202ENST00000355477 GOLGA7BQ2TAP0 167 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 SGO2Q562F6 1265 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 PIGZQ86VD9 579 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 ARHGEF19Q8IW93 802 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 BBS7Q8IWZ6 715 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 PPM1KQ8N3J5 372 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 EHBP1Q8NDI1 1231 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 TBC1D14Q9P2M4 693 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 TSPAN16Q9UKR8 245 aa19.36■□□□□ 0.69
CLN3-202ENST00000355477 ANTXRLA6NF34 631 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 MDM4O15151 490 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 GREM1O60565 184 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 AFPP02771 609 aaKnown RBP19.35■□□□□ 0.69
CLN3-202ENST00000355477 CD19P15391 556 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 SLC6A11P48066 632 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 PDE4CQ08493 712 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 MESP2Q0VG99 397 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 RAB41Q5JT25 222 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 HEATR6Q6AI08 1181 aaKnown RBP19.35■□□□□ 0.69
CLN3-202ENST00000355477 TMEM270Q6UE05 265 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 CLEC17AQ6ZS10 378 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 RRAGAQ7L523 313 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 UBA3Q8TBC4 463 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 TFAP2BQ92481 460 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 NAGPAQ9UK23 515 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 SH3BP1Q9Y3L3 701 aa19.35■□□□□ 0.69
CLN3-202ENST00000355477 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLN3-202ENST00000355477 RALGAPA1Q6GYQ0 2036 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 K7EQS6 105 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 FGFR1OPO95684 399 aaKnown RBP19.34■□□□□ 0.69
CLN3-202ENST00000355477 CALCAP01258 141 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 CCDC192P0DO97 292 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 VDRP11473 427 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 CETN1Q12798 172 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 LY6G5CQ5SRR4 150 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 HTR3DQ70Z44 454 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 C12orf40Q86WS4 652 aa19.34■□□□□ 0.69
CLN3-202ENST00000355477 IRF2BP1Q8IU81 584 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms