RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PCOLCE2Q9UKZ9 415 aa11.94□□□□□ -0.5
RTN3-204ENST00000354497 SNX9Q9Y5X1 595 aa11.94□□□□□ -0.5
RTN3-204ENST00000354497 LOC400499M0QZD8 3231 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 MYH11P35749 1972 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 VWA3AA6NCI4 1184 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 ATP2C2O75185 946 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 TBCAO75347 108 aaKnown RBP11.93□□□□□ -0.5
RTN3-204ENST00000354497 GJB3O75712 270 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 IL18RAPO95256 599 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 NDUFV2P19404 249 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 BDNFP23560 247 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 PRPHP41219 470 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 ABCG1P45844 678 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 TOB1P50616 345 aaPredicted RBP11.93□□□□□ -0.5
RTN3-204ENST00000354497 NEK4P51957 841 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 SLC7A9P82251 487 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 DSG2Q14126 1118 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 ANO4Q32M45 955 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 SLFN12LQ6IEE8 588 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 DENND5BQ6ZUT9 1274 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 NUDT18Q6ZVK8 323 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 CSGALNACT2Q8N6G5 542 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 FBXO18Q8NFZ0 1043 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 POMGNT1Q8WZA1 660 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 FUBP3Q96I24 572 aaKnown RBP eCLIP11.93□□□□□ -0.5
RTN3-204ENST00000354497 FAM84AQ96KN4 292 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 SYT15Q9BQS2 421 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 SLC6A17Q9H1V8 727 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 IKZF4Q9H2S9 585 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 IL21RQ9HBE5 538 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 CD93Q9NPY3 652 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 DEC1Q9P2X7 70 aa11.93□□□□□ -0.5
RTN3-204ENST00000354497 HELZP42694 1942 aaKnown RBP11.92□□□□□ -0.5
RTN3-204ENST00000354497 ZNF840PA6NDX5 716 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 TRABD2BA6NFA1 517 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 PFKLP17858 780 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 SCP2P22307 547 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 NTSR1P30989 418 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 MAGEA11P43364 429 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 LHX1P48742 406 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 ANAPC15P60006 121 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 KLHL40Q2TBA0 621 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 HYIQ5T013 277 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 EGFLAMQ63HQ2 1017 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 TMPRSS7Q7RTY8 843 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 DDX42Q86XP3 938 aaKnown RBP eCLIP11.92□□□□□ -0.5
RTN3-204ENST00000354497 CHPFQ8IZ52 775 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 ZCCHC9Q8N567 271 aaKnown RBP11.92□□□□□ -0.5
RTN3-204ENST00000354497 RASSF8Q8NHQ8 419 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 FOXJ1Q92949 421 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 FAM213AQ9BRX8 229 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 CACNA2D2Q9NY47 1150 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 EHD2Q9NZN4 543 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 SH3BP1Q9Y3L3 701 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 CEP83Q9Y592 693 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 RAD54BQ9Y620 910 aa11.92□□□□□ -0.5
RTN3-204ENST00000354497 MORC2Q9Y6X9 1032 aaPredicted RBP11.92□□□□□ -0.5
RTN3-204ENST00000354497 A0A0A0MRY4 1105 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 FAM149AA5PLN7 773 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 TRIM24O15164 1050 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 CTIFO43310 598 aaKnown RBP11.91□□□□□ -0.5
RTN3-204ENST00000354497 CBFA2T3O75081 653 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 TULP3O75386 442 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 PDGFRBP09619 1106 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 ATXN1LP0C7T5 689 aaKnown RBP11.91□□□□□ -0.5
RTN3-204ENST00000354497 IRF1P10914 325 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 PREPLQ4J6C6 727 aaPredicted RBP11.91□□□□□ -0.5
RTN3-204ENST00000354497 TMEM119Q4V9L6 283 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 GRAMD4Q6IC98 578 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 CRELD2Q6UXH1 353 aaPredicted RBP11.91□□□□□ -0.5
RTN3-204ENST00000354497 NT5DC4Q86YG4 428 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 MIB1Q86YT6 1006 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 PHTF2Q8N3S3 785 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 TOP6BLQ8N6T0 577 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 C1orf127Q8N9H9 656 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 TERB1Q8NA31 727 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 RHBDD1Q8TEB9 315 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 CACTINQ8WUQ7 758 aaKnown RBP11.91□□□□□ -0.5
RTN3-204ENST00000354497 SAAL1Q96ER3 474 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 SPATA17Q96L03 361 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 ZDHHC5Q9C0B5 715 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 GAREM1Q9H706 876 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 TBC1D14Q9P2M4 693 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 PCNX2A6NKB5 2137 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 PLXND1Q9Y4D7 1925 aa11.91□□□□□ -0.5
RTN3-204ENST00000354497 A0A1B0GTW7 788 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 A0A1W2PQF6 199 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 TRIM66O15016 1216 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 CER1O95813 267 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 ABCD1P33897 745 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 MATKP42679 507 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 PPP3CCP48454 512 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 WNT7BP56706 349 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 GTF2BQ00403 316 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 TAF10Q12962 218 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 MCM6Q14566 821 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 TERF2Q15554 542 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 TDRD10Q5VZ19 366 aaKnown RBP11.9□□□□□ -0.5
RTN3-204ENST00000354497 SCARA3Q6AZY7 606 aa11.9□□□□□ -0.5
RTN3-204ENST00000354497 VSTM1Q6UX27 236 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms