RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PPIL2Q13356 520 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 MROH7-TTC4A0A0A0MT08 1334 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 PENKP01210 267 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 SLC9A3P48764 834 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 TOB2Q14106 344 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 USP39Q53GS9 565 aaKnown RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 EXT2Q93063 718 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CAB39LQ9H9S4 337 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 GDAQ9Y2T3 454 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CLUHO75153 1309 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 KLHL18O94889 574 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 PEPDP12955 493 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CDH4P55283 916 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 ARHGEF6Q15052 776 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 SF3B3Q15393 1217 aaKnown RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 VPS72Q15906 364 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 C1orf54Q8WWF1 131 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 RPF1Q9H9Y2 349 aaKnown RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 REM1O75628 298 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CDH6P55285 790 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 NCALDP61601 193 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 DLG1Q12959 904 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 IP6K1Q92551 441 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 VPS4AQ9UN37 437 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 FAM20BO75063 409 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 HSMCR30P0CW71 290 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 CYP51A1Q16850 503 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 C6orf52Q5T4I8 152 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 SLC9A4Q6AI14 798 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 TTC23LQ6PF05 361 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 HEXIM2Q96MH2 286 aaKnown RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 CHD2O14647 1828 aaKnown RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 AKAP8O43823 692 aaKnown RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 VAC14Q08AM6 782 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 HERC3Q15034 1050 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 POC5Q8NA72 575 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 NEDD4LQ96PU5 975 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 CASS4Q9NQ75 786 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 GGT7Q9UJ14 662 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 OR14I1A6ND48 311 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 DNAJA2O60884 412 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 STXBP2Q15833 593 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF605Q86T29 641 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 EPB41L4BQ9H329 900 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 MARCH7Q9H992 704 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 NAPEPLDQ6IQ20 393 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 TMEM270Q6UE05 265 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 SLC13A5Q86YT5 568 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 SPATA18Q8TC71 538 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 XKR8Q9H6D3 395 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 DENND4BO75064 1496 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 NR4A1P22736 598 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 PDPK2PQ6A1A2 396 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 UTYO14607 1347 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 ATP7AQ04656 1500 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 KCNN4O15554 427 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 NUDT17P0C025 328 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 GSSP48637 474 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 NSUN2Q08J23 767 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 STX4Q12846 297 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 TFDP3Q5H9I0 405 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 TAB3Q8N5C8 712 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 PGBD4Q96DM1 585 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 NGRNQ9NPE2 291 aaKnown RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 CPDO75976 1380 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 A0A1W2PQ72 361 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 FCHO1O14526 889 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 UCHL3P15374 230 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 ITIH1P19827 911 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 ATG14Q6ZNE5 492 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 HES6Q96HZ4 224 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 USP42Q9H9J4 1324 aaKnown RBP12.98□□□□□ -0.33
COL6A3-203ENST00000353578 UGGT1Q9NYU2 1555 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 LOC100653049A0A140TA62 436 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 ASMTLO95671 621 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 MUTP22033 750 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 CCND2P30279 289 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 TNK2Q07912 1038 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 ACVR2BQ13705 512 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 MAPKAPK5Q8IW41 473 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 APOL2Q9BQE5 337 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 SNX7Q9UNH6 387 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 IVNS1ABPQ9Y6Y0 642 aa12.98□□□□□ -0.33
COL6A3-203ENST00000353578 SPDYE5A6NIY4 337 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 CNTN1Q12860 1018 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SPDYE7PQ495Y7 208 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 MAEAQ7L5Y9 396 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SYTL1Q8IYJ3 562 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 FBXW8Q8N3Y1 598 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 TRIM9Q9C026 710 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ORC5O43913 435 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SERPINA6P08185 405 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ALOX15P16050 662 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SHROOM1Q2M3G4 852 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 PKN3Q6P5Z2 889 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-203ENST00000353578 MSTO1Q9BUK6 570 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 DNAJC11Q9NVH1 559 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 SDR42E2A6NKP2 422 aa12.97□□□□□ -0.33
COL6A3-203ENST00000353578 ATP6V1B2P21281 511 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms