RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 KHSRPQ92945 711 aaKnown RBP eCLIP23.05■■□□□ 1.289e-6■□□□□ 8.8
UPF3A-201ENST00000351487 FAF2Q96CS3 445 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 MRPL45Q9BRJ2 306 aaKnown RBP23.05■■□□□ 1.28
UPF3A-201ENST00000351487 ZNF670Q9BS34 389 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 BAIAP2L1Q9UHR4 511 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 KBTBD13C9JR72 458 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 PIAS1O75925 651 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 ADRA1DP25100 572 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 SDC4P31431 198 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 MAGEA6P43360 314 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 ATP11AP98196 1134 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 MTM1Q13496 603 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 C1orf228Q6PIY5 440 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 STK32AQ8WU08 396 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 FAM172AQ8WUF8 416 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 MYLK2Q9H1R3 596 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 PNPLA8Q9NP80 782 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 NGRNQ9NPE2 291 aaKnown RBP23.05■■□□□ 1.28
UPF3A-201ENST00000351487 TXLNGQ9NUQ3 528 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 CHKBQ9Y259 395 aa23.05■■□□□ 1.28
UPF3A-201ENST00000351487 IQANK1A0A1B0GTG1 560 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 BCLAF3A2AJT9 711 aaKnown RBP23.04■■□□□ 1.28
UPF3A-201ENST00000351487 DCTN3O75935 186 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 LDLRAD1Q5T700 205 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 USP50Q70EL3 339 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-201ENST00000351487 OTOAQ7RTW8 1153 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 ZDHHC17Q8IUH5 632 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 TCP10LQ8TDR4 215 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 SNX27Q96L92 541 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 SNRNP25Q9BV90 132 aaKnown RBP23.04■■□□□ 1.28
UPF3A-201ENST00000351487 VPS11Q9H270 941 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 NME7Q9Y5B8 376 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 SRCAPQ6ZRS2 3230 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 ATP5HO75947 161 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 KRT16P08779 473 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 ALDH3A1P30838 453 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 BCAR1P56945 870 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 ZBTB6Q15916 424 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 APBB1IPQ7Z5R6 666 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-201ENST00000351487 ACOT1Q86TX2 421 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 LRRC52Q8N7C0 313 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 PCDH19Q8TAB3 1148 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 ZNF398Q8TD17 642 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 LRRC37BQ96QE4 947 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 RAB6BQ9NRW1 208 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 SNX9Q9Y5X1 595 aa23.04■■□□□ 1.28
UPF3A-201ENST00000351487 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-201ENST00000351487 KCNN4O15554 427 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 PAPSS1O43252 624 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-201ENST00000351487 DESP17661 470 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 SNX16P57768 344 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 ZNF200P98182 395 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-201ENST00000351487 PTK7Q13308 1070 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 KBTBD12Q3ZCT8 623 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 SPDYAQ5MJ70 313 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 UNC93AQ86WB7 457 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 ERP27Q96DN0 273 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 ZMAT2Q96NC0 199 aaKnown RBP23.03■■□□□ 1.28
UPF3A-201ENST00000351487 GPATCH2LQ9NWQ4 482 aa23.03■■□□□ 1.28
UPF3A-201ENST00000351487 NPTXRO95502 500 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 SNAI1O95863 264 aaPredicted RBP23.02■■□□□ 1.28
UPF3A-201ENST00000351487 YWHAZP63104 245 aaKnown RBP23.02■■□□□ 1.28
UPF3A-201ENST00000351487 ARHGAP17Q68EM7 881 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 SCYL2Q6P3W7 929 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 AGGF1Q8N302 714 aaeCLIP23.02■■□□□ 1.28
UPF3A-201ENST00000351487 KIF2BQ8N4N8 673 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 CXCL16Q9H2A7 254 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 FAM49BQ9NUQ9 324 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 HESX1Q9UBX0 185 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 PPEF2O14830 753 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 GABBR2O75899 941 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 C1QAP02745 245 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 MMP3P08254 477 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 HOXA11P31270 313 aaPredicted RBP23.02■■□□□ 1.28
UPF3A-201ENST00000351487 HDAC4P56524 1084 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 SEPT7Q16181 437 aaKnown RBP23.02■■□□□ 1.28
UPF3A-201ENST00000351487 CCDC91Q7Z6B0 441 aa23.02■■□□□ 1.28
UPF3A-201ENST00000351487 STRNO43815 780 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 ZBED1O96006 694 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 MT-ND3P03897 115 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 DHRS4L1P0CG22 281 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 RBL1P28749 1068 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 PTPN9P43378 593 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 SLC18A2Q05940 514 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 CA9Q16790 459 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 SLC27A1Q6PCB7 646 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 SH2D5Q6ZV89 423 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 THOC1Q96FV9 657 aaKnown RBP23.01■■□□□ 1.27
UPF3A-201ENST00000351487 APOPT1Q96IL0 206 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 C11orf84Q9BUA3 381 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-201ENST00000351487 KLC2Q9H0B6 622 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 ADAMTS10Q9H324 1103 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 SLC17A7Q9P2U7 560 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 IKBKGQ9Y6K9 419 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 HGSO14964 777 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-201ENST00000351487 FAM155BO75949 473 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 INHBAP08476 426 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 NEK3P51956 506 aa23.01■■□□□ 1.27
UPF3A-201ENST00000351487 YWHAGP61981 247 aaKnown RBP eCLIP23.01■■□□□ 1.27
UPF3A-201ENST00000351487 CEP57Q86XR8 500 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms