RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TSPAN1O60635 241 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 KCNE1P15382 129 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 KLK7P49862 253 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 GEMP55040 296 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CDH8P55286 799 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 LILRA4P59901 499 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 DGKZQ13574 1117 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 WSCD1Q658N2 575 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 DEFB128Q7Z7B8 93 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 DEFB106AQ8N104 65 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 EMC1Q8N766 993 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 FBXO25Q8TCJ0 367 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MCUR1Q96AQ8 359 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ACBD6Q9BR61 282 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TUBB6Q9BUF5 446 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 OSGEPQ9NPF4 335 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 VPS45Q9NRW7 570 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 HACD3Q9P035 362 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TLL2Q9Y6L7 1015 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CACNA1GO43497 2377 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 RBM47A0AV96 593 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 RBAK-RBAKDNI3L0D1 243 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 EPHB6O15197 1021 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 POLBP06746 335 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TAC1P20366 129 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ATP5C1P36542 298 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MLH1P40692 756 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 YBEYP58557 167 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 FMO1Q01740 532 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 RMDN1Q96DB5 314 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ULBP1Q9BZM6 244 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 VRTNQ9H8Y1 702 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 METTL5Q9NRN9 209 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MARCH2Q9P0N8 246 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 L1RE1Q9UN81 338 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 NOVA2Q9UNW9 492 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 IPPQ9Y573 584 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 GOLGA8MH3BSY2 632 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF197O14709 1029 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 HADHBP55084 474 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 DNAJC3Q13217 504 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MORF4L2Q15014 288 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CDCA2Q69YH5 1023 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 LRIG3Q6UXM1 1119 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ZBED8Q8IZ13 594 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 NXF3Q9H4D5 531 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 PDZD7Q9H5P4 517 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 PCDHGC3Q9UN70 934 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 NEU2Q9Y3R4 380 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 SLC12A8A0AV02 714 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ARVCFO00192 962 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 SNAI1O95863 264 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 RFC1P35251 1148 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MATKP42679 507 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MBTD1Q05BQ5 628 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CDH18Q13634 790 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 SPOCD1Q6ZMY3 1216 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ARHGEF19Q8IW93 802 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CXorf38Q8TB03 319 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 GRAMD1AQ96CP6 724 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 CPB2Q96IY4 423 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 TTYH3Q9C0H2 523 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 GOLPH3Q9H4A6 298 aa7.13□□□□□ -1.27
SF3B1-201ENST00000335508 MRPL17Q9NRX2 175 aaKnown RBP7.13□□□□□ -1.27
SF3B1-201ENST00000335508 ABHD14A-ACY1A0A1B0GW23 586 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TMEM191CA6NGB0 347 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 E5RJQ4 531 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 STX7O15400 261 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 FGF10O15520 208 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 RAMP2O60895 175 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ARIH2O95376 493 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 S100BP04271 92 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 PTPN9P43378 593 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 SEPT6Q14141 434 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MDH1BQ5I0G3 518 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 AARS2Q5JTZ9 985 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MARC1Q5VT66 337 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 PSRC1Q6PGN9 363 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 FAM35AQ86V20 835 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 DPF3Q92784 378 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TSPAN17Q96FV3 270 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 HNRNPABQ99729 332 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 DRG1Q9Y295 367 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 FSCN2O14926 492 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 BNIP3LO60238 219 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 PFKMP08237 780 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 KCNJ1P48048 391 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 INTS6LQ5JSJ4 861 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 HGSNATQ68CP4 663 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TTC8Q8TAM2 541 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 STAMBPL1Q96FJ0 436 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 C9orf72Q96LT7 481 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF670Q9BS34 389 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TRIM66O15016 1216 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 KCNN4O15554 427 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 HSPA8P11142 646 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 FGFR4P22455 802 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MIPP30301 263 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ADSSP30520 456 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms