RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 RAB21Q9UL25 225 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SART1O43290 800 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 HSF2BPO75031 334 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 TCP1P17987 556 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 MAGEA11P43364 429 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CCDC181Q5TID7 509 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SPRED2Q7Z698 418 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 C2orf15Q8WU43 125 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CFAP57Q96MR6 1250 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 TCF25Q9BQ70 676 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CYP4F11Q9HBI6 524 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 PNPLA8Q9NP80 782 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 ASNSD1Q9NWL6 643 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 TMEM59LQ9UK28 342 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SSX2IPQ9Y2D8 614 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 MIF4GDA9UHW6 222 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 H0YGN5 161 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 PRRG1O14668 218 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CTSAP10619 480 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 RPL10AP62906 217 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 YWHAZP63104 245 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 ZNF252P-AS1Q0IIN9 211 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 DCAF6Q58WW2 860 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 ODF2Q5BJF6 829 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 RAB41Q5JT25 222 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 PLPP4Q5VZY2 271 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 ZNF461Q8TAF7 563 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 ZBP1Q9H171 429 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 NGRNQ9NPE2 291 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 C2CD4BA6NLJ0 364 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 YJEFN3A6XGL0 299 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 E7ENQ6 273 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 TEX28O15482 410 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 LPXNO60711 386 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 ZNF143P52747 638 aaPredicted RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 DAOAP59103 153 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CREMQ03060 361 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 C15orf59Q2T9L4 293 aaPredicted RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CREG2Q8IUH2 290 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 NUP93Q8N1F7 819 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 GIPC2Q8TF65 315 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 COG1Q8WTW3 980 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 POF1BQ8WVV4 589 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 KRT35Q92764 455 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 HES6Q96HZ4 224 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 C8orf48Q96LL4 319 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CNPY3Q9BT09 278 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 C11orf84Q9BUA3 381 aaPredicted RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CRISPLD1Q9H336 500 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 AFF4Q9UHB7 1163 aaKnown RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 MAGED2Q9UNF1 606 aaPredicted RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 SYNJ2BP-COX16A0A087WUM0 186 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CEP104O60308 925 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 ARHGEF15O94989 841 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 HAPLN1P10915 354 aaPredicted RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 MARCKSL1P49006 195 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 TUFMP49411 452 aaKnown RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 TAF12Q16514 161 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 SCYL2Q6P3W7 929 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 HFE2Q6ZVN8 426 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 DEFB106AQ8N104 65 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 FNIP1Q8TF40 1166 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 PLVAPQ9BX97 442 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CERS4Q9HA82 394 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 COX16Q9P0S2 106 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 PCSK1NQ9UHG2 260 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 LTFP02788 710 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 SPATA31D3P0C874 917 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 NCAM1P13591 858 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 MAN1A1P33908 653 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 SCNN1AP37088 669 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 TPGS2Q68CL5 300 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 SPATA31D4Q6ZUB0 917 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 DENND5BQ6ZUT9 1274 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 RHOT1Q8IXI2 618 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 EDEM1Q92611 657 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 TGS1Q96RS0 853 aaKnown RBP10.49□□□□□ -0.73
HMGB3-201ENST00000325307 POPDC2Q9HBU9 364 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 PCDHA11Q9Y5I1 949 aa10.49□□□□□ -0.73
HMGB3-201ENST00000325307 CTAGE15A4D2H0 777 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 VNN2O95498 520 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 CNPP09543 421 aaKnown RBP10.48□□□□□ -0.73
HMGB3-201ENST00000325307 RHOXF2BP0C7M4 288 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 CTAGE8P0CG41 777 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 PBX2P40425 430 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ALDH1A3P47895 512 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 VSNL1P62760 191 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ZNF211Q13398 564 aaPredicted RBP10.48□□□□□ -0.73
HMGB3-201ENST00000325307 HADHQ16836 314 aaKnown RBP10.48□□□□□ -0.73
HMGB3-201ENST00000325307 TRNP1Q6NT89 227 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 CTAGE6Q86UF2 777 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 CTAGE4Q8IX94 777 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 FAM172AQ8WUF8 416 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 KHSRPQ92945 711 aaKnown RBP eCLIP10.48□□□□□ -0.73
HMGB3-201ENST00000325307 RHOXF2Q9BQY4 288 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 FBXO44Q9H4M3 255 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ZWILCHQ9H900 591 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms