RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SOX6P35712 828 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 GPC3P51654 580 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 ALDH18A1P54886 795 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 SCRN3Q0VDG4 424 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TP53BP2Q13625 1128 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 IMPG1Q17R60 797 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 BRDTQ58F21 947 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 GET4Q7L5D6 327 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 GPR141Q7Z602 305 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CERKQ8TCT0 537 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 SIPA1Q96FS4 1042 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CRAMP1Q96RY5 1269 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 MANSC1Q9H8J5 431 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 ZNF277Q9NRM2 450 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 STOML2Q9UJZ1 356 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 GTF2A1LQ9UNN4 478 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 NEU2Q9Y3R4 380 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PDZK1P1A8MUH7 402 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CBFA2T3O75081 653 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TUFMP49411 452 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 TNFAIP2Q03169 654 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PDAP1Q13442 181 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 FAM43BQ6ZT52 329 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS35-201ENST00000299138 SEPT1Q8WYJ6 367 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 KRT35Q92764 455 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 SAYSD1Q9NPB0 183 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 UBE2TQ9NPD8 197 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 DDX43Q9NXZ2 648 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 PI4KBQ9UBF8 816 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 HERC5Q9UII4 1024 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 RPTORQ8N122 1335 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 A0A0U1RQJ8 604 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 COBLO75128 1261 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 TAC1P20366 129 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 KLK7P49862 253 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CACNA2D1P54289 1103 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 OTUD4Q01804 1114 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 ERFEQ4G0M1 354 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 FAM182BQ5T319 152 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SLC25A24Q6NUK1 477 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 MAPKAPK5Q8IW41 473 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ZNF333Q96JL9 665 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SENP7Q9BQF6 1050 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 TUBA8Q9NY65 449 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 PRPF19Q9UMS4 504 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 TRPM3Q9HCF6 1732 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 SMCO3A2RU48 225 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 KCNQ2O43526 872 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ARIH2O95376 493 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PTGS2P35354 604 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 MPP2Q14168 576 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PLCH1Q4KWH8 1693 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 LRRC74BQ6ZQY2 392 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 KIAA0408Q6ZU52 694 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SLC26A11Q86WA9 606 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PHF13Q86YI8 300 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 TNIP2Q8NFZ5 429 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SYT11Q9BT88 431 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 TBC1D10AQ9BXI6 508 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PAIP1Q9H074 479 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 SIX2Q9NPC8 291 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 EURLQ9NYK6 297 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PAK5Q9P286 719 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 IGKV6D-41A0A0C4DH26 115 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 C1orf232A0A0U1RR37 186 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 KBTBD13C9JR72 458 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ITGA4P13612 1032 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CENPAP49450 140 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 INSCQ1MX18 579 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ARMC4Q5T2S8 1044 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SYDE2Q5VT97 1194 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CHMP1BQ7LBR1 199 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 RSAD1Q9HA92 442 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 IL17RBQ9NRM6 502 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CDY2AQ9Y6F7 541 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CDY1Q9Y6F8 540 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 KRT1P04264 644 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ITGAVP06756 1048 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 HSD3B2P26439 372 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PTDSS1P48651 473 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 SLC12A3P55017 1021 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 NR1H2P55055 460 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ADARP55265 1226 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 DMP1Q13316 513 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 TRADDQ15628 312 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 QRICH1Q2TAL8 776 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SPATS1Q496A3 300 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 EPC2Q52LR7 807 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 VSTM1Q6UX27 236 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 C16orf89Q6UX73 402 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ZNF786Q8N393 782 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CCDC24Q8N4L8 307 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CCNYQ8ND76 341 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PIGUQ9H490 435 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 STK39Q9UEW8 545 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ANAPC7Q9UJX3 599 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 RBMX2Q9Y388 322 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 ASB3Q9Y575 518 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 TRIM43BA6NCK2 446 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms