RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 UBR7Q8N806 425 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 NETO2Q8NC67 525 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 NRG4Q8WWG1 115 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 DNAJC9Q8WXX5 260 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 FAF2Q96CS3 445 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ACAP3Q96P50 834 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 PEBP4Q96S96 227 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 NMUR2Q9GZQ4 415 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 R3HDMLQ9H3Y0 253 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 SMYD3Q9H7B4 428 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 RAB6BQ9NRW1 208 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 NMRK1Q9NWW6 199 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ZFATQ9P243 1243 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 COL11A1P12107 1806 aaPredicted RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 CAPN9O14815 690 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 MCF2LO15068 1137 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 GSC2O15499 205 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ADCY3O60266 1144 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 SLC25A27O95847 323 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ESRRAP11474 423 aaPredicted RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 ABCD1P33897 745 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ASPAP45381 313 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 KDSRQ06136 332 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 KLHL38Q2WGJ6 581 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 EEF1DP3Q658K8 133 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 SHKBP1Q8TBC3 707 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 SYT15Q9BQS2 421 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 MAGEB5Q9BZ81 275 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 PPP1R12CQ9BZL4 782 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 SDCBP2Q9H190 292 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.47□□□□□ -0.73
LIG3-201ENST00000262327 PIH1D1Q9NWS0 290 aaKnown RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 TAS2R1Q9NYW7 299 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 WASF2Q9Y6W5 498 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 INO80B-WBP1J3KQ70 363 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 MAFGO15525 162 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 CXCL8P10145 99 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ZNF200P98182 395 aaPredicted RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 HADHQ16836 314 aaKnown RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 LY6KQ17RY6 165 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 FAM102AQ5T9C2 384 aaPredicted RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 CES4AQ5XG92 561 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 BBS12Q6ZW61 710 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 SLC25A41Q8N5S1 370 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 B4GALNT2Q8NHY0 566 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 NSL1Q96IY1 281 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 CYTH2Q99418 400 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 BTBD10Q9BSF8 475 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 INO80BQ9C086 356 aaPredicted RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 IQCGQ9H095 443 aaKnown RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 BTBD7Q9P203 1132 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 USP18Q9UMW8 372 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 LRRC42Q9Y546 428 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 MAFBQ9Y5Q3 323 aaPredicted RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 H3BRJ5 948 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 FCHO1O14526 889 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 MSCO60682 206 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 AMPD1P23109 780 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 RGS7P49802 495 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 THOC5Q13769 683 aaKnown RBP10.46□□□□□ -0.73
LIG3-201ENST00000262327 SGSM1Q2NKQ1 1148 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 SNX30Q5VWJ9 437 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 TMEM154Q6P9G4 183 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 SLC30A9Q6PML9 568 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 NCAPG2Q86XI2 1143 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 ARID3BQ8IVW6 561 aaPredicted RBP10.46□□□□□ -0.73
LIG3-201ENST00000262327 SPATC1LQ9H0A9 340 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 PIDD1Q9HB75 910 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 DLGAP2Q9P1A6 1054 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 WDR81Q562E7 1941 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 CENPFP49454 3210 aa10.46□□□□□ -0.73
LIG3-201ENST00000262327 E2F8A0AVK6 867 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 SIGLEC16A6NMB1 481 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 M0QYV0 167 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 KCNN4O15554 427 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 CCDC22O60826 627 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 TBX10O75333 385 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 CNMDO75829 334 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 PRKCBP05771 671 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 KRT7P08729 469 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 UBA1P22314 1058 aaKnown RBP10.46□□□□□ -0.74
LIG3-201ENST00000262327 RFC5P40937 340 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 SERPINB4P48594 390 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 STAT5BP51692 787 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 STXBP2Q15833 593 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 PCGF5Q86SE9 256 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 XYLT1Q86Y38 959 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 TREML1Q86YW5 311 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 WDR49Q8IV35 697 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 PDCD7Q8N8D1 485 aaKnown RBP10.46□□□□□ -0.74
LIG3-201ENST00000262327 PTCD3Q96EY7 689 aaKnown RBP10.46□□□□□ -0.74
LIG3-201ENST00000262327 MS4A4AQ96JQ5 239 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 FAM161BQ96MY7 647 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 SRPK1Q96SB4 655 aaKnown RBP10.46□□□□□ -0.74
LIG3-201ENST00000262327 XYLT2Q9H1B5 865 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 RNF19AQ9NV58 838 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 SLC17A6Q9P2U8 582 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 PPARGC1AQ9UBK2 798 aaKnown RBP10.46□□□□□ -0.74
LIG3-201ENST00000262327 PCDHGA4Q9Y5G9 962 aa10.46□□□□□ -0.74
LIG3-201ENST00000262327 COPEO14579 308 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms