RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 LCP1P13796 627 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 KDSRQ06136 332 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.19■■□□□ 1.143e-21■□□□□ 10.8
TRIM28-201ENST00000253024 MMP19Q99542 508 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 DHX35Q9H5Z1 703 aaKnown RBP22.19■■□□□ 1.14
TRIM28-201ENST00000253024 SMYD2Q9NRG4 433 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 KCNG1Q9UIX4 513 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 NEBLO76041 1014 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 NPTXRO95502 500 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 ARF4P18085 180 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-201ENST00000253024 GPD1P21695 349 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 GTF2A2P52657 109 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 RIPK1Q13546 671 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 KHDC1Q4VXA5 237 aaKnown RBP22.19■■□□□ 1.14
TRIM28-201ENST00000253024 PYROXD2Q8N2H3 581 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 CLPTM1LQ96KA5 538 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 SEPT10Q9P0V9 454 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 CSADQ9Y600 493 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 PEX11AO75192 247 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 CILPO75339 1184 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 RPS12P25398 132 aaKnown RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 KIZQ2M2Z5 673 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 CELF3Q5SZQ8 465 aaKnown RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 BZW1Q7L1Q6 419 aaKnown RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 ARID3BQ8IVW6 561 aaPredicted RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 RAB3IPQ96QF0 476 aaPredicted RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 MRPL45Q9BRJ2 306 aaKnown RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 ZNF518BQ9C0D4 1074 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 DPEP3Q9H4B8 488 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 IFT122Q9HBG6 1241 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 RLFQ13129 1914 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 COPEO14579 308 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 ENO1P06733 434 aaKnown RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 ABCG1P45844 678 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 KLHL38Q2WGJ6 581 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 TDRPQ86YL5 185 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 HACE1Q8IYU2 909 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 SRPK1Q96SB4 655 aaKnown RBP22.18■■□□□ 1.14
TRIM28-201ENST00000253024 TRIM55Q9BYV6 548 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 ASNSD1Q9NWL6 643 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 LAMA3Q16787 3333 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 TRIP11Q15643 1979 aa22.18■■□□□ 1.14
TRIM28-201ENST00000253024 CCDC78A2IDD5 438 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 HAUS5O94927 633 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 PCK1P35558 622 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 TMPRSS15P98073 1019 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 TSHZ1Q6ZSZ6 1077 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 MZB1Q8WU39 189 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 KLK14Q9P0G3 267 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 SOCS7O14512 581 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 ZWINTO95229 277 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 METTL18O95568 372 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 ACVR2BQ13705 512 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 CES4AQ5XG92 561 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 PCGF5Q86SE9 256 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 APOBEC3FQ8IUX4 373 aaKnown RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 ZNF276Q8N554 614 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 SLC25A41Q8N5S1 370 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 PLD5Q8N7P1 536 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 SHKBP1Q8TBC3 707 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 C18orf25Q96B23 403 aaPredicted RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 MIEF2Q96C03 454 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 FOXP3Q9BZS1 431 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 NMUR2Q9GZQ4 415 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 LRMDAQ9H2I8 198 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 PTPRHQ9HD43 1115 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 MGAMO43451 1857 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 YWHAZP63104 245 aaKnown RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 TAP1Q03518 808 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 KCTD2Q14681 263 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 KPNB1Q14974 876 aaKnown RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 RINLQ6ZS11 566 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 VPS52Q8N1B4 723 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 NIPA2Q8N8Q9 360 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 OR6B3Q8NGW1 331 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 PCDH19Q8TAB3 1148 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 SNRNP25Q9BV90 132 aaKnown RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 CADM1Q9BY67 442 aaKnown RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 CACNG4Q9UBN1 327 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 SEC23IPQ9Y6Y8 1000 aaKnown RBP22.17■■□□□ 1.14
TRIM28-201ENST00000253024 PSME4Q14997 1843 aa22.17■■□□□ 1.14
TRIM28-201ENST00000253024 A0A1B0GUA9 196 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 KRT36O76013 467 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CSH1P0DML2 217 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CSH2P0DML3 217 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 TMEM132DQ14C87 1099 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CCDC6Q16204 474 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CCDC14Q49A88 953 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CDCA2Q69YH5 1023 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CYP4V2Q6ZWL3 525 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-201ENST00000253024 ILDR2Q71H61 639 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 POLNQ7Z5Q5 900 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 TTC13Q8NBP0 860 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CMASQ8NFW8 434 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-201ENST00000253024 MAGEC3Q8TD91 643 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 GYG2O15488 501 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 B4GALT4O60513 344 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 ALADP13716 330 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 CCDC130P13994 396 aa22.16■■□□□ 1.14
TRIM28-201ENST00000253024 ALDH18A1P54886 795 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms