RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 OTUD5Q96G74 571 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 C12orf65Q9H3J6 166 aaKnown RBP17.09■□□□□ 0.33
HOXD3-201ENST00000249440 LNPEPQ9UIQ6 1025 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 DCTN4Q9UJW0 460 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 KCNN4O15554 427 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 STAU1O95793 577 aaKnown RBP17.09■□□□□ 0.33
HOXD3-201ENST00000249440 NEFHP12036 1026 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 INSRRP14616 1297 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 TGM2P21980 687 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 PTPN4P29074 926 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 ETV4P43268 484 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 NEK3P51956 506 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 FAAP100Q0VG06 881 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 OVGP1Q12889 678 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 SYCP2LQ5T4T6 812 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 SCYL2Q6P3W7 929 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 SLC26A11Q86WA9 606 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 RTP4Q96DX8 246 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 CPB2Q96IY4 423 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 SERAC1Q96JX3 654 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 C2CD2Q9Y426 696 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 ZSWIM8A7E2V4 1837 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 OTOFQ9HC10 1997 aa17.09■□□□□ 0.33
HOXD3-201ENST00000249440 A0A0G2JND7 137 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 APOL1O14791 398 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 AVILO75366 819 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 GRAP2O75791 330 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 TGDSO95455 350 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 DESP17661 470 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 CLNS1AP54105 237 aaKnown RBP17.08■□□□□ 0.33
HOXD3-201ENST00000249440 BCAR1P56945 870 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 CCDC14Q49A88 953 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 TTC39BQ5VTQ0 682 aaPredicted RBP17.08■□□□□ 0.33
HOXD3-201ENST00000249440 SH2D5Q6ZV89 423 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 LONP2Q86WA8 852 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 PTPRN2Q92932 1015 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 PIWIL1Q96J94 861 aaKnown RBP17.08■□□□□ 0.33
HOXD3-201ENST00000249440 FAM111AQ96PZ2 611 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 TUBB6Q9BUF5 446 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 KLC2Q9H0B6 622 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 ELP3Q9H9T3 547 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 GBA2Q9HCG7 927 aaPredicted RBP17.08■□□□□ 0.33
HOXD3-201ENST00000249440 TXNRD2Q9NNW7 524 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 ADARB2Q9NS39 739 aaKnown RBP17.08■□□□□ 0.33
HOXD3-201ENST00000249440 DPP3Q9NY33 737 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 AKT3Q9Y243 479 aa17.08■□□□□ 0.33
HOXD3-201ENST00000249440 KAT6AQ92794 2004 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 ZBED1O96006 694 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 PYGBP11216 843 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 ARF4P18085 180 aaPredicted RBP17.08■□□□□ 0.32
HOXD3-201ENST00000249440 IL4RP24394 825 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 CCNG1P51959 295 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 SLC8A3P57103 927 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 Q3C1V9 767 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 RAB6CQ53S08 254 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 MOB2Q70IA6 237 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 LRRC6Q86X45 466 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 NT5DC4Q86YG4 428 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 FAM13CQ8NE31 585 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 RFWD2Q8NHY2 731 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 TEKT4Q8WW24 435 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 ACAP3Q96P50 834 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 TBCBQ99426 244 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 IQCGQ9H095 443 aaKnown RBP17.08■□□□□ 0.32
HOXD3-201ENST00000249440 RAB6CQ9H0N0 254 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 ALG13Q9NP73 1137 aaKnown RBP17.08■□□□□ 0.32
HOXD3-201ENST00000249440 RBPJLQ9UBG7 517 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 HEY1Q9Y5J3 304 aa17.08■□□□□ 0.32
HOXD3-201ENST00000249440 KRT37O76014 449 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 CYP3A5P20815 502 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 EPHX2P34913 555 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 IREB2P48200 963 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 ARFIP2P53365 341 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 CTC1Q2NKJ3 1217 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 LGSNQ5TDP6 509 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 USP6NLQ92738 828 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 TTC17Q96AE7 1141 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 PPP1R16BQ96T49 567 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 NGRNQ9NPE2 291 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 PDGFCQ9NRA1 345 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 RPL26L1Q9UNX3 145 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 MTO1Q9Y2Z2 717 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 BCLAF3A2AJT9 711 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 DPYSL4O14531 572 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 CXCL11O14625 94 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 TRDMT1O14717 391 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 PFKMP08237 780 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 RBL1P28749 1068 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 EPHB2P29323 1055 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 SDC4P31431 198 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 YWHAZP63104 245 aaKnown RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 PRKD1Q15139 912 aaPredicted RBP17.07■□□□□ 0.32
HOXD3-201ENST00000249440 SLC9A4Q6AI14 798 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 DPY19L2Q6NUT2 758 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 ERO1BQ86YB8 467 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 CTAGE3PQ8IX95 158 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 C12orf29Q8N999 325 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 CFAP36Q96G28 342 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 RNPEPL1Q9HAU8 725 aa17.07■□□□□ 0.32
HOXD3-201ENST00000249440 HEY2Q9UBP5 337 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms