RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C ERP2P39704 215 aa7.41□□□□□ -1.22
DEF1YKL054C TRS120Q04183 1289 aa7.41□□□□□ -1.22
DEF1YKL054C UTP14Q04500 899 aaKnown RBP7.41□□□□□ -1.22
DEF1YKL054C YDL206WQ12424 762 aa7.41□□□□□ -1.22
DEF1YKL054C MOD5P07884 428 aa7.4□□□□□ -1.22
DEF1YKL054C SUV3P32580 737 aa7.4□□□□□ -1.22
DEF1YKL054C MNN4P36044 1178 aa7.4□□□□□ -1.22
DEF1YKL054C GRX7P38068 203 aa7.4□□□□□ -1.23
DEF1YKL054C YOR131CQ12486 218 aa7.4□□□□□ -1.23
DEF1YKL054C NKP1Q12493 238 aa7.4□□□□□ -1.23
DEF1YKL054C SPT16P32558 1035 aaKnown RBP7.39□□□□□ -1.23
DEF1YKL054C TIM23P32897 222 aa7.39□□□□□ -1.23
DEF1YKL054C YHR020WP38708 688 aaKnown RBP7.39□□□□□ -1.23
DEF1YKL054C RPS26AP39938 119 aaKnown RBP7.39□□□□□ -1.23
DEF1YKL054C RPS26BP39939 119 aaKnown RBP7.39□□□□□ -1.23
DEF1YKL054C MSH4P40965 878 aaPredicted RBP7.39□□□□□ -1.23
DEF1YKL054C FOL1P53848 824 aa7.39□□□□□ -1.23
DEF1YKL054C PDC1P06169 563 aaKnown RBP7.38□□□□□ -1.23
DEF1YKL054C PEX8P53248 589 aa7.38□□□□□ -1.23
DEF1YKL054C CEF1Q03654 590 aaPredicted RBP7.38□□□□□ -1.23
DEF1YKL054C YPR084WQ06821 456 aa7.38□□□□□ -1.23
DEF1YKL054C FRA1Q07825 749 aa7.38□□□□□ -1.23
DEF1YKL054C GAS4Q08271 471 aa7.38□□□□□ -1.23
DEF1YKL054C THS1P04801 734 aaKnown RBP7.37□□□□□ -1.23
DEF1YKL054C MNR2P35724 969 aa7.37□□□□□ -1.23
DEF1YKL054C POL5P39985 1022 aaKnown RBP7.37□□□□□ -1.23
DEF1YKL054C RPA14P50106 137 aa7.37□□□□□ -1.23
DEF1YKL054C TOS4Q06266 489 aa7.37□□□□□ -1.23
DEF1YKL054C YPR097WQ06839 1073 aa7.37□□□□□ -1.23
DEF1YKL054C CYC8P14922 966 aa7.37□□□□□ -1.23
DEF1YKL054C CDC11P32458 415 aa7.37□□□□□ -1.23
DEF1YKL054C TBF1Q02457 562 aa7.37□□□□□ -1.23
DEF1YKL054C TSC13Q99190 310 aa7.37□□□□□ -1.23
DEF1YKL054C TRX2P22803 104 aaKnown RBP7.36□□□□□ -1.23
DEF1YKL054C COG4Q06096 861 aa7.36□□□□□ -1.23
DEF1YKL054C RAD27P26793 382 aa7.36□□□□□ -1.23
DEF1YKL054C YOR378WQ08902 515 aa7.36□□□□□ -1.23
DEF1YKL054C MRC1P25588 1096 aa7.35□□□□□ -1.23
DEF1YKL054C PAT1P25644 796 aaKnown RBP7.35□□□□□ -1.23
DEF1YKL054C CRP1P38845 465 aaKnown RBP7.35□□□□□ -1.23
DEF1YKL054C YNR029CP53729 429 aaKnown RBP7.35□□□□□ -1.23
DEF1YKL054C UTP13Q05946 817 aaKnown RBP7.35□□□□□ -1.23
DEF1YKL054C PHO8P11491 566 aa7.34□□□□□ -1.23
DEF1YKL054C HXT10P43581 546 aa7.34□□□□□ -1.23
DEF1YKL054C YGR122WP53272 402 aa7.34□□□□□ -1.23
DEF1YKL054C GDE1Q02979 1223 aa7.34□□□□□ -1.23
DEF1YKL054C TPD3P31383 635 aa7.33□□□□□ -1.24
DEF1YKL054C RPT2P40327 437 aaKnown RBP7.33□□□□□ -1.24
DEF1YKL054C VPS27P40343 622 aaKnown RBP7.33□□□□□ -1.24
DEF1YKL054C NAB6Q03735 1134 aaKnown RBP RIP-Chip data7.33□□□□□ -1.24not detected
DEF1YKL054C PET112P33893 541 aa7.33□□□□□ -1.24
DEF1YKL054C PEP7P32609 515 aa7.32□□□□□ -1.24
DEF1YKL054C KTR2P33550 425 aa7.32□□□□□ -1.24
DEF1YKL054C YFR016CP43597 1233 aaKnown RBP7.32□□□□□ -1.24
DEF1YKL054C ALR1Q08269 859 aa7.32□□□□□ -1.24
DEF1YKL054C APC11Q12157 165 aa7.32□□□□□ -1.24
DEF1YKL054C NOP14Q99207 810 aaKnown RBP7.32□□□□□ -1.24
DEF1YKL054C SPT2P06843 333 aaPredicted RBP7.32□□□□□ -1.24
DEF1YKL054C RAD4P14736 754 aa7.32□□□□□ -1.24
DEF1YKL054C SRM1P21827 482 aa7.32□□□□□ -1.24
DEF1YKL054C MRF1P30775 413 aaPredicted RBP7.32□□□□□ -1.24
DEF1YKL054C NFU1P32860 256 aa7.32□□□□□ -1.24
DEF1YKL054C NOC2P39744 710 aaKnown RBP7.32□□□□□ -1.24
DEF1YKL054C SPR3P41901 512 aa7.32□□□□□ -1.24
DEF1YKL054C PDI1P17967 522 aaKnown RBP7.31□□□□□ -1.24
DEF1YKL054C SOH1P38633 127 aa7.31□□□□□ -1.24
DEF1YKL054C KXD1P53158 218 aa7.31□□□□□ -1.24
DEF1YKL054C VAN1P23642 535 aa7.31□□□□□ -1.24
DEF1YKL054C CHZ1P40019 153 aaPredicted RBP7.31□□□□□ -1.24
DEF1YKL054C IES5P40060 125 aa7.31□□□□□ -1.24
DEF1YKL054C RRD1P40454 393 aaKnown RBP7.31□□□□□ -1.24
DEF1YKL054C BDP1P46678 594 aa7.31□□□□□ -1.24
DEF1YKL054C YLR125WQ12138 136 aa7.3□□□□□ -1.24
DEF1YKL054C DPS1P04802 557 aaKnown RBP7.29□□□□□ -1.24
DEF1YKL054C SPF1P39986 1215 aaKnown RBP7.29□□□□□ -1.24
DEF1YKL054C FAA4P47912 694 aaKnown RBP7.29□□□□□ -1.24
DEF1YKL054C HIF1Q12373 385 aa7.29□□□□□ -1.24
DEF1YKL054C HXK1P04806 485 aaKnown RBP7.29□□□□□ -1.24
DEF1YKL054C VPS35P34110 944 aa7.29□□□□□ -1.24
DEF1YKL054C FIG4P42837 879 aa7.29□□□□□ -1.24
DEF1YKL054C YGR053CP53234 283 aa7.29□□□□□ -1.24
DEF1YKL054C STE20Q03497 939 aaKnown RBP7.29□□□□□ -1.24
DEF1YKL054C RAS1P01119 309 aa7.28□□□□□ -1.24
DEF1YKL054C PIF1P07271 859 aa7.28□□□□□ -1.24
DEF1YKL054C GCD6P32501 712 aaKnown RBP7.28□□□□□ -1.24
DEF1YKL054C DUT1P33317 147 aa7.28□□□□□ -1.24
DEF1YKL054C MFT1P33441 392 aaKnown RBP7.28□□□□□ -1.24
DEF1YKL054C CWC24P53769 259 aa7.28□□□□□ -1.24
DEF1YKL054C ERR1P0CX10 437 aa7.28□□□□□ -1.24
DEF1YKL054C ERR2P0CX11 437 aa7.28□□□□□ -1.24
DEF1YKL054C UBP1P25037 809 aa7.28□□□□□ -1.24
DEF1YKL054C YKL069WP36088 180 aa7.28□□□□□ -1.24
DEF1YKL054C YGR021WP53212 290 aa7.28□□□□□ -1.24
DEF1YKL054C TRS33Q99394 268 aa7.28□□□□□ -1.24
DEF1YKL054C SNF7P39929 240 aaKnown RBP7.27□□□□□ -1.25
DEF1YKL054C ATG3P40344 310 aa7.27□□□□□ -1.25
DEF1YKL054C RPL8AP17076 256 aaKnown RBP7.27□□□□□ -1.25
DEF1YKL054C RPB10P22139 70 aa7.27□□□□□ -1.25
DEF1YKL054C HAL5P38970 855 aaKnown RBP7.27□□□□□ -1.25
DEF1YKL054C TYW3P53177 273 aa7.27□□□□□ -1.25
Retrieved 100 of 5,963 RNA–protein pairs in 446.3 ms