RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 TNNQ9UQP3 1299 aa17.87■□□□□ 0.45
PHGDH-233ENST00000642021 PPRC1Q5VV67 1664 aaKnown RBP17.86■□□□□ 0.45
PHGDH-233ENST00000642021 KIF1BO60333 1816 aa17.86■□□□□ 0.45
PHGDH-233ENST00000642021 CANXP27824 592 aaKnown RBP17.86■□□□□ 0.45
PHGDH-233ENST00000642021 USP19O94966 1318 aa17.86■□□□□ 0.45
PHGDH-233ENST00000642021 SEC24BO95487 1268 aa17.85■□□□□ 0.45
PHGDH-233ENST00000642021 RUNDC1Q96C34 613 aa17.85■□□□□ 0.45
PHGDH-233ENST00000642021 IFT172Q9UG01 1749 aa17.85■□□□□ 0.45
PHGDH-233ENST00000642021 RARSP54136 660 aaKnown RBP17.85■□□□□ 0.45
PHGDH-233ENST00000642021 MTHFSP49914 203 aa17.85■□□□□ 0.45
PHGDH-233ENST00000642021 GGT6Q6P531 493 aa17.84■□□□□ 0.45
PHGDH-233ENST00000642021 PHF23Q9BUL5 403 aaPredicted RBP17.84■□□□□ 0.45
PHGDH-233ENST00000642021 RLBP1P12271 317 aa17.84■□□□□ 0.45
PHGDH-233ENST00000642021 MYO3AQ8NEV4 1616 aa17.83■□□□□ 0.45
PHGDH-233ENST00000642021 BCL2L13Q9BXK5 485 aa17.83■□□□□ 0.45
PHGDH-233ENST00000642021 ASXL2Q76L83 1435 aa17.83■□□□□ 0.44
PHGDH-233ENST00000642021 KIDINS220Q9ULH0 1771 aa17.83■□□□□ 0.44
PHGDH-233ENST00000642021 NUTM2DQ5VT03 806 aaPredicted RBP17.83■□□□□ 0.44
PHGDH-233ENST00000642021 NPATQ14207 1427 aa17.82■□□□□ 0.44
PHGDH-233ENST00000642021 ADGRB3O60242 1522 aa17.82■□□□□ 0.44
PHGDH-233ENST00000642021 GSE1Q14687 1217 aa17.82■□□□□ 0.44
PHGDH-233ENST00000642021 PCDHB15Q9Y5E8 787 aa17.81■□□□□ 0.44
PHGDH-233ENST00000642021 SHPRHQ149N8 1683 aa17.81■□□□□ 0.44
PHGDH-233ENST00000642021 LMTK2Q8IWU2 1503 aa17.8■□□□□ 0.44
PHGDH-233ENST00000642021 FRAT2O75474 233 aaPredicted RBP17.8■□□□□ 0.44
PHGDH-233ENST00000642021 ADGRB1O14514 1584 aa17.8■□□□□ 0.44
PHGDH-233ENST00000642021 RTN4Q9NQC3 1192 aaKnown RBP17.8■□□□□ 0.44
PHGDH-233ENST00000642021 SETBP1Q9Y6X0 1596 aa17.79■□□□□ 0.44
PHGDH-233ENST00000642021 ZNF518AQ6AHZ1 1483 aa17.79■□□□□ 0.44
PHGDH-233ENST00000642021 CFAP65Q6ZU64 1925 aaKnown RBP17.79■□□□□ 0.44
PHGDH-233ENST00000642021 WDR63Q8IWG1 891 aa17.79■□□□□ 0.44
PHGDH-233ENST00000642021 IQSEC2Q5JU85 1478 aa17.78■□□□□ 0.44
PHGDH-233ENST00000642021 NINLQ9Y2I6 1382 aa17.78■□□□□ 0.44
PHGDH-233ENST00000642021 MAPK8IP3Q9UPT6 1336 aa17.76■□□□□ 0.43
PHGDH-233ENST00000642021 SENP3Q9H4L4 574 aaPredicted RBP17.75■□□□□ 0.43
PHGDH-233ENST00000642021 CABP2Q9NPB3 220 aa17.75■□□□□ 0.43
PHGDH-233ENST00000642021 QRICH2Q9H0J4 1663 aa17.75■□□□□ 0.43
PHGDH-233ENST00000642021 U2AF1L5P0DN76 240 aaPredicted RBP17.74■□□□□ 0.43
PHGDH-233ENST00000642021 U2AF1Q01081 240 aaKnown RBP eCLIP17.74■□□□□ 0.43
PHGDH-233ENST00000642021 SAFB2Q14151 953 aaKnown RBP eCLIP17.74■□□□□ 0.43
PHGDH-233ENST00000642021 CCDC27Q2M243 656 aa17.74■□□□□ 0.43
PHGDH-233ENST00000642021 BRPF3Q9ULD4 1205 aa17.74■□□□□ 0.43
PHGDH-233ENST00000642021 CFAP53Q96M91 514 aa17.74■□□□□ 0.43
PHGDH-233ENST00000642021 FRMPD1Q5SYB0 1578 aa17.73■□□□□ 0.43
PHGDH-233ENST00000642021 PMFBP1Q8TBY8 1022 aa17.73■□□□□ 0.43
PHGDH-233ENST00000642021 PDZRN3Q9UPQ7 1066 aa17.73■□□□□ 0.43
PHGDH-233ENST00000642021 RPGRIP1LQ68CZ1 1315 aa17.72■□□□□ 0.43
PHGDH-233ENST00000642021 PPLO60437 1756 aa17.72■□□□□ 0.43
PHGDH-233ENST00000642021 PKNOX2Q96KN3 472 aa17.72■□□□□ 0.43
PHGDH-233ENST00000642021 ZC3H13Q5T200 1668 aaKnown RBP17.72■□□□□ 0.43
PHGDH-233ENST00000642021 EVC2Q86UK5 1308 aa17.72■□□□□ 0.43
PHGDH-233ENST00000642021 TSR2Q969E8 191 aaKnown RBP17.71■□□□□ 0.43
PHGDH-233ENST00000642021 ANKRD36BQ8N2N9 1353 aa17.7■□□□□ 0.42
PHGDH-233ENST00000642021 NLRP1Q9C000 1473 aa17.7■□□□□ 0.42
PHGDH-233ENST00000642021 TULP4Q9NRJ4 1543 aa17.7■□□□□ 0.42
PHGDH-233ENST00000642021 PODXL2Q9NZ53 605 aa17.69■□□□□ 0.42
PHGDH-233ENST00000642021 MYH16Q9H6N6 1097 aa17.69■□□□□ 0.42
PHGDH-233ENST00000642021 POGZQ7Z3K3 1410 aa17.69■□□□□ 0.42
PHGDH-233ENST00000642021 AAMPQ13685 434 aa17.68■□□□□ 0.42
PHGDH-233ENST00000642021 CD109Q6YHK3 1445 aa17.68■□□□□ 0.42
PHGDH-233ENST00000642021 VGFO15240 615 aaPredicted RBP17.68■□□□□ 0.42
PHGDH-233ENST00000642021 MVPQ14764 893 aaKnown RBP17.68■□□□□ 0.42
PHGDH-233ENST00000642021 PUS7Q96PZ0 661 aaKnown RBP17.68■□□□□ 0.42
PHGDH-233ENST00000642021 GGNBP2Q9H3C7 697 aa17.68■□□□□ 0.42
PHGDH-233ENST00000642021 RAPGEF3O95398 923 aa17.67■□□□□ 0.42
PHGDH-233ENST00000642021 SLKQ9H2G2 1235 aaPredicted RBP17.67■□□□□ 0.42
PHGDH-233ENST00000642021 STK26Q9P289 416 aa17.67■□□□□ 0.42
PHGDH-233ENST00000642021 MLH3Q9UHC1 1453 aa17.67■□□□□ 0.42
PHGDH-233ENST00000642021 ABCC3O15438 1527 aa17.67■□□□□ 0.42
PHGDH-233ENST00000642021 RWDD1Q9H446 243 aaPredicted RBP17.67■□□□□ 0.42
PHGDH-233ENST00000642021 USP32Q8NFA0 1604 aa17.66■□□□□ 0.42
PHGDH-233ENST00000642021 GLI2P10070 1586 aa17.66■□□□□ 0.42
PHGDH-233ENST00000642021 PLEKHF1Q96S99 279 aa17.66■□□□□ 0.42
PHGDH-233ENST00000642021 U2SURPO15042 1029 aaKnown RBP17.66■□□□□ 0.42
PHGDH-233ENST00000642021 IDI1Q13907 227 aa17.66■□□□□ 0.42
PHGDH-233ENST00000642021 VIRMAQ69YN4 1812 aaKnown RBP17.65■□□□□ 0.42
PHGDH-233ENST00000642021 NPM1P06748 294 aaKnown RBP eCLIP17.65■□□□□ 0.42
PHGDH-233ENST00000642021 EXOSC9Q06265 439 aaKnown RBP17.65■□□□□ 0.42
PHGDH-233ENST00000642021 ZKSCAN2Q63HK3 967 aa17.65■□□□□ 0.42
PHGDH-233ENST00000642021 TRIM35Q9UPQ4 493 aa17.65■□□□□ 0.42
PHGDH-233ENST00000642021 A0A1W2PP64 1363 aa17.65■□□□□ 0.42
PHGDH-233ENST00000642021 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.41
PHGDH-233ENST00000642021 DZIP1LQ8IYY4 767 aaKnown RBP17.64■□□□□ 0.41
PHGDH-233ENST00000642021 TBC1D32Q96NH3 1257 aa17.64■□□□□ 0.41
PHGDH-233ENST00000642021 NSD2O96028 1365 aa17.64■□□□□ 0.41
PHGDH-233ENST00000642021 TMPOP42166 694 aaKnown RBP17.63■□□□□ 0.41
PHGDH-233ENST00000642021 SIGLEC1Q9BZZ2 1709 aa17.63■□□□□ 0.41
PHGDH-233ENST00000642021 HECW2Q9P2P5 1572 aa17.63■□□□□ 0.41
PHGDH-233ENST00000642021 SRPK2P78362 688 aaKnown RBP17.63■□□□□ 0.41
PHGDH-233ENST00000642021 BECN1Q14457 450 aa17.63■□□□□ 0.41
PHGDH-233ENST00000642021 FTSJ3Q8IY81 847 aaKnown RBP17.63■□□□□ 0.41
PHGDH-233ENST00000642021 TRIM27P14373 513 aa17.62■□□□□ 0.41
PHGDH-233ENST00000642021 SSH1Q8WYL5 1049 aa17.62■□□□□ 0.41
PHGDH-233ENST00000642021 ANTXR1Q9H6X2 564 aa17.62■□□□□ 0.41
PHGDH-233ENST00000642021 SMC4Q9NTJ3 1288 aa17.62■□□□□ 0.41
PHGDH-233ENST00000642021 NEXMIFQ5QGS0 1516 aa17.62■□□□□ 0.41
PHGDH-233ENST00000642021 FYB1O15117 783 aa17.62■□□□□ 0.41
PHGDH-233ENST00000642021 ABCC11Q96J66 1382 aa17.61■□□□□ 0.41
PHGDH-233ENST00000642021 ARHGEF28Q8N1W1 1705 aaKnown RBP17.61■□□□□ 0.41
PHGDH-233ENST00000642021 TBC1D2Q9BYX2 928 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms