RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 USP32Q8NFA0 1604 aa22.42■■□□□ 1.18
PHGDH-229ENST00000641891 DUSP27Q5VZP5 1158 aa22.42■■□□□ 1.18
PHGDH-229ENST00000641891 PTPRMP28827 1452 aa22.41■■□□□ 1.18
PHGDH-229ENST00000641891 APAF1O14727 1248 aa22.41■■□□□ 1.18
PHGDH-229ENST00000641891 POLR3AO14802 1390 aaPredicted RBP22.4■■□□□ 1.18
PHGDH-229ENST00000641891 KIF13AQ9H1H9 1805 aa22.39■■□□□ 1.18
PHGDH-229ENST00000641891 GOLGA2Q08379 1002 aa22.39■■□□□ 1.18
PHGDH-229ENST00000641891 STAG3Q9UJ98 1225 aa22.39■■□□□ 1.18
PHGDH-229ENST00000641891 SHPRHQ149N8 1683 aa22.39■■□□□ 1.18
PHGDH-229ENST00000641891 ANKRD36BQ8N2N9 1353 aa22.38■■□□□ 1.17
PHGDH-229ENST00000641891 PUS7Q96PZ0 661 aaKnown RBP22.38■■□□□ 1.17
PHGDH-229ENST00000641891 ALKQ9UM73 1620 aa22.38■■□□□ 1.17
PHGDH-229ENST00000641891 YTHDC2Q9H6S0 1430 aaKnown RBP22.38■■□□□ 1.17
PHGDH-229ENST00000641891 CGNL1Q0VF96 1302 aa22.37■■□□□ 1.17
PHGDH-229ENST00000641891 PRAM1Q96QH2 718 aa22.37■■□□□ 1.17
PHGDH-229ENST00000641891 MINK1Q8N4C8 1332 aaPredicted RBP22.37■■□□□ 1.17
PHGDH-229ENST00000641891 ARHGEF40Q8TER5 1519 aa22.36■■□□□ 1.17
PHGDH-229ENST00000641891 SPINK5Q9NQ38 1064 aaPredicted RBP22.36■■□□□ 1.17
PHGDH-229ENST00000641891 SPATA31D1Q6ZQQ2 1576 aa22.36■■□□□ 1.17
PHGDH-229ENST00000641891 SRPK2P78362 688 aaKnown RBP22.35■■□□□ 1.17
PHGDH-229ENST00000641891 SLFN5Q08AF3 891 aa22.35■■□□□ 1.17
PHGDH-229ENST00000641891 PPP6R1Q9UPN7 881 aa22.35■■□□□ 1.17
PHGDH-229ENST00000641891 A2ML1A8K2U0 1454 aa22.34■■□□□ 1.17
PHGDH-229ENST00000641891 CRBNQ96SW2 442 aa22.33■■□□□ 1.17
PHGDH-229ENST00000641891 C20orf194Q5TEA3 1177 aa22.33■■□□□ 1.16
PHGDH-229ENST00000641891 A0A1W2PP64 1363 aa22.32■■□□□ 1.16
PHGDH-229ENST00000641891 POGKQ9P215 609 aa22.32■■□□□ 1.16
PHGDH-229ENST00000641891 DMRT2Q9Y5R5 561 aa22.32■■□□□ 1.16
PHGDH-229ENST00000641891 MTHFSP49914 203 aa22.32■■□□□ 1.16
PHGDH-229ENST00000641891 TRMT2AQ8IZ69 625 aaKnown RBP22.31■■□□□ 1.16
PHGDH-229ENST00000641891 FANCIQ9NVI1 1328 aa22.3■■□□□ 1.16
PHGDH-229ENST00000641891 MSH5O43196 834 aa22.3■■□□□ 1.16
PHGDH-229ENST00000641891 RIMS2Q9UQ26 1411 aa22.29■■□□□ 1.16
PHGDH-229ENST00000641891 NSD2O96028 1365 aa22.28■■□□□ 1.16
PHGDH-229ENST00000641891 ABCC11Q96J66 1382 aa22.26■■□□□ 1.15
PHGDH-229ENST00000641891 NINLQ9Y2I6 1382 aa22.26■■□□□ 1.15
PHGDH-229ENST00000641891 SETD1AO15047 1707 aaKnown RBP22.26■■□□□ 1.15
PHGDH-229ENST00000641891 CD163L1Q9NR16 1453 aa22.26■■□□□ 1.15
PHGDH-229ENST00000641891 ATAD2Q6PL18 1390 aa22.26■■□□□ 1.15
PHGDH-229ENST00000641891 NKTRP30414 1462 aaKnown RBP22.25■■□□□ 1.15
PHGDH-229ENST00000641891 RRP7AQ9Y3A4 280 aaKnown RBP22.25■■□□□ 1.15
PHGDH-229ENST00000641891 CDK19Q9BWU1 502 aa22.24■■□□□ 1.15
PHGDH-229ENST00000641891 GGNBP2Q9H3C7 697 aa22.24■■□□□ 1.15
PHGDH-229ENST00000641891 IQSEC2Q5JU85 1478 aa22.24■■□□□ 1.15
PHGDH-229ENST00000641891 E9PSI1 815 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 NEUROD2Q15784 382 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 WAPLQ7Z5K2 1190 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 WWC1Q8IX03 1113 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 RUNDC1Q96C34 613 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 CFAP53Q96M91 514 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 ZMYM3Q14202 1370 aa22.23■■□□□ 1.15
PHGDH-229ENST00000641891 ANP32EQ9BTT0 268 aa22.21■■□□□ 1.15
PHGDH-229ENST00000641891 NRXN3Q9Y4C0 1643 aa22.21■■□□□ 1.15
PHGDH-229ENST00000641891 NGEFQ8N5V2 710 aa22.21■■□□□ 1.15
PHGDH-229ENST00000641891 ESF1Q9H501 851 aaKnown RBP22.21■■□□□ 1.15
PHGDH-229ENST00000641891 TCP11L2Q8N4U5 519 aa22.2■■□□□ 1.14
PHGDH-229ENST00000641891 TERF2IPQ9NYB0 399 aa22.2■■□□□ 1.14
PHGDH-229ENST00000641891 DLC1Q96QB1 1528 aa22.19■■□□□ 1.14
PHGDH-229ENST00000641891 NLRP1Q9C000 1473 aa22.19■■□□□ 1.14
PHGDH-229ENST00000641891 FYB1O15117 783 aa22.18■■□□□ 1.14
PHGDH-229ENST00000641891 BCAR3O75815 825 aa22.18■■□□□ 1.14
PHGDH-229ENST00000641891 CABP1Q9NZU7 370 aa22.18■■□□□ 1.14
PHGDH-229ENST00000641891 ANKRD26Q9UPS8 1709 aa22.18■■□□□ 1.14
PHGDH-229ENST00000641891 U2AF1L5P0DN76 240 aaPredicted RBP22.16■■□□□ 1.14
PHGDH-229ENST00000641891 U2AF1Q01081 240 aaKnown RBP eCLIP22.16■■□□□ 1.14
PHGDH-229ENST00000641891 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.16■■□□□ 1.14
PHGDH-229ENST00000641891 METP08581 1390 aa22.16■■□□□ 1.14
PHGDH-229ENST00000641891 SKAP1Q86WV1 359 aa22.15■■□□□ 1.14
PHGDH-229ENST00000641891 HDGFL2Q7Z4V5 671 aaPredicted RBP22.15■■□□□ 1.14
PHGDH-229ENST00000641891 PHF23Q9BUL5 403 aaPredicted RBP22.14■■□□□ 1.13
PHGDH-229ENST00000641891 COL3A1P02461 1466 aaPredicted RBP22.13■■□□□ 1.13
PHGDH-229ENST00000641891 MED14O60244 1454 aa22.12■■□□□ 1.13
PHGDH-229ENST00000641891 TNRQ92752 1358 aa22.12■■□□□ 1.13
PHGDH-229ENST00000641891 KIF20BQ96Q89 1820 aa22.12■■□□□ 1.13
PHGDH-229ENST00000641891 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.11■■□□□ 1.13
PHGDH-229ENST00000641891 TCERG1O14776 1098 aaKnown RBP22.1■■□□□ 1.13
PHGDH-229ENST00000641891 TXNDC2Q86VQ3 553 aa22.1■■□□□ 1.13
PHGDH-229ENST00000641891 ADGRB2O60241 1585 aa22.1■■□□□ 1.13
PHGDH-229ENST00000641891 U2SURPO15042 1029 aaKnown RBP22.09■■□□□ 1.13
PHGDH-229ENST00000641891 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.09■■□□□ 1.13
PHGDH-229ENST00000641891 KDM2BQ8NHM5 1336 aa22.09■■□□□ 1.13
PHGDH-229ENST00000641891 UBR1Q8IWV7 1749 aa22.08■■□□□ 1.12
PHGDH-229ENST00000641891 WDR63Q8IWG1 891 aa22.07■■□□□ 1.12
PHGDH-229ENST00000641891 ATP7BP35670 1465 aa22.07■■□□□ 1.12
PHGDH-229ENST00000641891 CCDC27Q2M243 656 aa22.06■■□□□ 1.12
PHGDH-229ENST00000641891 WASLO00401 505 aaPredicted RBP22.05■■□□□ 1.12
PHGDH-229ENST00000641891 FBLN1P23142 703 aa22.05■■□□□ 1.12
PHGDH-229ENST00000641891 PLEKHF1Q96S99 279 aa22.05■■□□□ 1.12
PHGDH-229ENST00000641891 TMEM2Q9UHN6 1383 aa22.04■■□□□ 1.12
PHGDH-229ENST00000641891 KNDC1Q76NI1 1749 aa22.04■■□□□ 1.12
PHGDH-229ENST00000641891 PPIP5K1Q6PFW1 1433 aa22.03■■□□□ 1.12
PHGDH-229ENST00000641891 NCKAP5LQ9HCH0 1330 aa22.03■■□□□ 1.12
PHGDH-229ENST00000641891 PDE4AP27815 886 aa22.02■■□□□ 1.12
PHGDH-229ENST00000641891 MS4A1P11836 297 aa22.01■■□□□ 1.11
PHGDH-229ENST00000641891 RARSP54136 660 aaKnown RBP22.01■■□□□ 1.11
PHGDH-229ENST00000641891 CENPQQ7L2Z9 268 aaPredicted RBP22.01■■□□□ 1.11
PHGDH-229ENST00000641891 CEBPAP49715 358 aaPredicted RBP22.01■■□□□ 1.11
PHGDH-229ENST00000641891 HDGFP51858 240 aaKnown RBP22.01■■□□□ 1.11
PHGDH-229ENST00000641891 MYT1Q01538 1121 aa22.01■■□□□ 1.11
PHGDH-229ENST00000641891 CPS1P31327 1500 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms