RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 HOMEZQ8IX15 550 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 BCCIPQ9P287 314 aaKnown RBP eCLIP3.34□□□□□ -1.88
SCN1A-219ENST00000641575 SETD5Q9C0A6 1442 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 NBPF8Q3BBV2 869 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 NBPF14Q5TI25 921 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 GIGYF2Q6Y7W6 1299 aaKnown RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 MPHOSPH10O00566 681 aaKnown RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 LPXNO60711 386 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 OPTNQ96CV9 577 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 NGLY1Q96IV0 654 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 BAZ1BQ9UIG0 1483 aaKnown RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 MYO1BO43795 1136 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 SLC3A2P08195 630 aaKnown RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 GTF2F1P35269 517 aaKnown RBP eCLIP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 LMOD3Q0VAK6 560 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 ZNF330Q9Y3S2 320 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 RAB3GAP2Q9H2M9 1393 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 UQCRHP07919 91 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 TMF1P82094 1093 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 DHX8Q14562 1220 aaKnown RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 EXOC4Q96A65 974 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 ZMYND15Q9H091 742 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 PRKAG2Q9UGJ0 569 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 PDE3BQ13370 1112 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 FILIP1Q7Z7B0 1213 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 RUFY2Q8WXA3 655 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 TSPYL1Q9H0U9 437 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 NACAE9PAV3 2078 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 HSP90B2PQ58FF3 399 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 C1orf141Q5JVX7 400 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 LEKR1Q6ZMV7 388 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 HS1BP3Q53T59 392 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 KIAA0754O94854 1291 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 RALBP1Q15311 655 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 TPD52L1Q16890 204 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 ERC1Q8IUD2 1116 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 ZNF592Q92610 1267 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 SLKQ9H2G2 1235 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-219ENST00000641575 APC2O95996 2303 aa3.33□□□□□ -1.88
SCN1A-219ENST00000641575 EPS15P42566 896 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 SKAP1Q86WV1 359 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TXLNBQ8N3L3 684 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 B4DLN1 442 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 RRP9O43818 475 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 MRPL12P52815 198 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 OPA1O60313 960 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 SCG3Q8WXD2 468 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 FERMT2Q96AC1 680 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 CABP1Q9NZU7 370 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TRIM29Q14134 588 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TMCO3Q6UWJ1 677 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 CLASRPQ8N2M8 674 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 IPO8O15397 1037 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 RAPGEF3O95398 923 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 STAMBPO95630 424 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 SETSIPP0DME0 302 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TRAF1Q13077 416 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TRIM63Q969Q1 353 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 KCNH8Q96L42 1107 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 AKAP6Q13023 2319 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TRDNQ13061 729 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TNIP1Q15025 636 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC117Q8IWD4 279 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 AIDAQ96BJ3 306 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 RTEL1Q9NZ71 1219 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 CARMIL2Q6F5E8 1435 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 RIOK3O14730 519 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 DZIP1Q86YF9 867 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 STK31Q9BXU1 1019 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 WNK2Q9Y3S1 2297 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 ZNF638Q14966 1978 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 GOLGA6L9A6NEM1 432 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TCERG1O14776 1098 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 RSPH4AQ5TD94 716 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 FAM43AQ8N2R8 423 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 STAC3Q96MF2 364 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 MTUS2Q5JR59 1369 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 NCBP1Q09161 790 aaKnown RBP3.32□□□□□ -1.88
SCN1A-219ENST00000641575 TMOD2Q9NZR1 351 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 CHMP3Q9Y3E7 222 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 ZNF462Q96JM2 2506 aa3.32□□□□□ -1.88
SCN1A-219ENST00000641575 CABIN1Q9Y6J0 2220 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 CPLX3Q8WVH0 158 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 RAD21O60216 631 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 IRX3P78415 501 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 GOLGA6L7A0A1B0GV03 622 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 LUC7LQ9NQ29 371 aaKnown RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 B4GALNT3Q6L9W6 998 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 SPATA32Q96LK8 384 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 CACNA1DQ01668 2161 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC14Q49A88 953 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 BRDTQ58F21 947 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 GOLGA1Q92805 767 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 DDX58O95786 925 aaKnown RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 IKQ13123 557 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 CREBRFQ8IUR6 639 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 ATP6V1E1P36543 226 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 MAP3K11Q16584 847 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 SPATA24Q86W54 205 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC150Q8NCX0 1101 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms