RNA–Protein interactions for RNA: ENST00000640072.1

NECAP1-222, Transcript of NECAP endocytosis associated 1, human

TSL 5

Gene NECAP1, Length 3,456 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-222	ENST00000640072	HMGB1P1	B2RPK0	211 aa	Predicted RBP	7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	ZRANB2	O95218	330 aa	Known RBP eCLIP	7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	BECN1	Q14457	450 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	CLUAP1	Q96AJ1	413 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	TRIM34	Q9BYJ4	488 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	BSDC1	Q9NW68	430 aa	Predicted RBP	7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	RIPK4	P57078	832 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	BICRA	Q9NZM4	1560 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	WDHD1	O75717	1129 aa	Predicted RBP	7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	SLC20A2	Q08357	652 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	KCNA1	Q09470	495 aa		7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	SUDS3	Q9H7L9	328 aa	Predicted RBP	7.57	□□□□□ -1.2
NECAP1-222	ENST00000640072	TERF1	P54274	439 aa		7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	SPOCK3	Q9BQ16	436 aa		7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	CHGA	P10645	457 aa	Known RBP	7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	MS4A1	P11836	297 aa		7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	KCNV2	Q8TDN2	545 aa		7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	RPGRIP1L	Q68CZ1	1315 aa		7.56	□□□□□ -1.2
NECAP1-222	ENST00000640072	DYNC1I1	O14576	645 aa		7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	OFD1	O75665	1012 aa		7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	IRX5	P78411	483 aa	Predicted RBP	7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	NEXN	Q0ZGT2	675 aa		7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	FEZ2	Q9UHY8	353 aa	Predicted RBP	7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	ISY1	Q9ULR0	285 aa	Known RBP	7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	ECM2	O94769	699 aa	Predicted RBP	7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	CCDC184	Q52MB2	194 aa		7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	IFNLR1	Q8IU57	520 aa	Predicted RBP	7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	TDO2	P48775	406 aa		7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	MYCBP	Q99417	103 aa	Predicted RBP	7.55	□□□□□ -1.2
NECAP1-222	ENST00000640072	SF3A1	Q15459	793 aa	Known RBP	7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	KDM4C	Q9H3R0	1056 aa		7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	GABBR1	Q9UBS5	961 aa		7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	ANAPC4	Q9UJX5	808 aa		7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	HDGFL1	Q5TGJ6	251 aa		7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	TSPYL1	Q9H0U9	437 aa		7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	ZNF777	Q9ULD5	760 aa	Predicted RBP	7.54	□□□□□ -1.2
NECAP1-222	ENST00000640072	CCDC172	P0C7W6	258 aa		7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	TNNT1	P13805	278 aa		7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	TIGD1	Q96MW7	591 aa		7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	PUS10	Q3MIT2	529 aa	Known RBP	7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	NUTM2G	Q5VZR2	741 aa		7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	HSCB	Q8IWL3	235 aa		7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	ITFG2	Q969R8	447 aa		7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	SLK	Q9H2G2	1235 aa	Predicted RBP	7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	MAGEC2	Q9UBF1	373 aa	Predicted RBP	7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	TPX2	Q9ULW0	747 aa	Known RBP	7.53	□□□□□ -1.2
NECAP1-222	ENST00000640072	ZNF853	P0CG23	659 aa		7.52	□□□□□ -1.21
NECAP1-222	ENST00000640072	LIG1	P18858	919 aa		7.52	□□□□□ -1.21
NECAP1-222	ENST00000640072	ZSCAN30	Q86W11	494 aa		7.52	□□□□□ -1.21
NECAP1-222	ENST00000640072	UBA5	Q9GZZ9	404 aa		7.52	□□□□□ -1.21
NECAP1-222	ENST00000640072	UPF2	Q9HAU5	1272 aa	Known RBP	7.52	□□□□□ -1.21
NECAP1-222	ENST00000640072	CT47A1	Q5JQC4	288 aa	Predicted RBP	7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	GRPEL1	Q9HAV7	217 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	WWC3	Q9ULE0	1092 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	KIF3A	Q9Y496	699 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	GIMAP6	Q6P9H5	292 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	PUF60	Q9UHX1	559 aa	Known RBP	7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	SMC3	Q9UQE7	1217 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	SMAP	O00193	183 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	TTC30B	Q8N4P2	665 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	NBPF3	Q9H094	633 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	PEG3	Q9GZU2	1588 aa		7.51	□□□□□ -1.21
NECAP1-222	ENST00000640072	ARHGEF10L	Q9HCE6	1279 aa		7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	ERBB4	Q15303	1308 aa		7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	GTF2A1	P52655	376 aa	Predicted RBP	7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	CCT2	P78371	535 aa	Known RBP	7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	HELB	Q8NG08	1087 aa	Predicted RBP	7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	PMM1	Q92871	262 aa		7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	CIZ1	Q9ULV3	898 aa	Predicted RBP	7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	BIRC2	Q13490	618 aa		7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	PPP4R3CP	Q6ZMV5	832 aa		7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.5	□□□□□ -1.21
NECAP1-222	ENST00000640072	MLEC	Q14165	292 aa		7.49	□□□□□ -1.21
NECAP1-222	ENST00000640072	BORCS6	Q96GS4	357 aa		7.49	□□□□□ -1.21
NECAP1-222	ENST00000640072	SMC4	Q9NTJ3	1288 aa		7.49	□□□□□ -1.21
NECAP1-222	ENST00000640072	TPM3	P06753	285 aa		7.49	□□□□□ -1.21
NECAP1-222	ENST00000640072	FAM210A	Q96ND0	272 aa		7.49	□□□□□ -1.21
NECAP1-222	ENST00000640072	VASP	P50552	380 aa	Predicted RBP	7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	HSP90AB2P	Q58FF8	381 aa		7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	CCDC85A	Q96PX6	553 aa	Predicted RBP	7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	TRERF1	Q96PN7	1200 aa		7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	CALCOCO1	Q9P1Z2	691 aa		7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	IPO7	O95373	1038 aa	Known RBP	7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	PDE6B	P35913	854 aa		7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	NUCKS1	Q9H1E3	243 aa	Known RBP	7.48	□□□□□ -1.21
NECAP1-222	ENST00000640072	SPDYE4	A6NLX3	237 aa		7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	PAX7	P23759	505 aa		7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	CLEC4G	Q6UXB4	293 aa		7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	SCRIB	Q14160	1630 aa		7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	PPP1R15A	O75807	674 aa	Predicted RBP	7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	U2AF1L5	P0DN76	240 aa	Predicted RBP	7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	LMNB1	P20700	586 aa		7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	U2AF1	Q01081	240 aa	Known RBP eCLIP	7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	SASS6	Q6UVJ0	657 aa		7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	7.47	□□□□□ -1.21
NECAP1-222	ENST00000640072	NAT1	P18440	290 aa		7.46	□□□□□ -1.21
NECAP1-222	ENST00000640072	LRCH2	Q5VUJ6	765 aa		7.46	□□□□□ -1.21
NECAP1-222	ENST00000640072	NCAPG	Q9BPX3	1015 aa		7.46	□□□□□ -1.21
NECAP1-222	ENST00000640072	EFCC1	Q9HA90	598 aa		7.46	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms