RNA–Protein interactions for RNA: ENST00000640058.1

CCDC7-216, Transcript of coiled-coil domain containing 7, humanhuman

TSL 3

Gene CCDC7, Length 251 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-216ENST00000640058 USB1Q9BQ65 265 aaKnown RBP11.67□□□□□ -0.54
CCDC7-216ENST00000640058 GPBP1L1Q9HC44 474 aaPredicted RBP11.67□□□□□ -0.54
CCDC7-216ENST00000640058 PCDHGC3Q9UN70 934 aa11.67□□□□□ -0.54
CCDC7-216ENST00000640058 FCF1Q9Y324 198 aaKnown RBP11.67□□□□□ -0.54
CCDC7-216ENST00000640058 V9GY48 417 aaPredicted RBP11.67□□□□□ -0.54
CCDC7-216ENST00000640058 SLC19A1P41440 591 aa11.66□□□□□ -0.54
CCDC7-216ENST00000640058 C6orf229H3BNL8 230 aa11.65□□□□□ -0.54
CCDC7-216ENST00000640058 LIAT1Q6ZQX7 453 aa11.64□□□□□ -0.55
CCDC7-216ENST00000640058 TPRNQ4KMQ1 711 aa11.63□□□□□ -0.55
CCDC7-216ENST00000640058 RSBN1LQ6PCB5 846 aaPredicted RBP11.61□□□□□ -0.55
CCDC7-216ENST00000640058 DIXDC1Q155Q3 683 aa11.6□□□□□ -0.55
CCDC7-216ENST00000640058 CSPP1Q1MSJ5 1256 aa11.6□□□□□ -0.55
CCDC7-216ENST00000640058 SPRYD7Q5W111 196 aa11.6□□□□□ -0.55
CCDC7-216ENST00000640058 RETREG3Q86VR2 466 aa11.6□□□□□ -0.55
CCDC7-216ENST00000640058 KDM4CQ9H3R0 1056 aa11.6□□□□□ -0.55
CCDC7-216ENST00000640058 MMP16P51512 607 aa11.59□□□□□ -0.55
CCDC7-216ENST00000640058 PCDHB15Q9Y5E8 787 aa11.59□□□□□ -0.55
CCDC7-216ENST00000640058 DXOO77932 396 aaKnown RBP11.58□□□□□ -0.56
CCDC7-216ENST00000640058 RIC3Q7Z5B4 369 aa11.58□□□□□ -0.56
CCDC7-216ENST00000640058 SPTLC1O15269 473 aa11.57□□□□□ -0.56
CCDC7-216ENST00000640058 GFRA3O60609 400 aa11.57□□□□□ -0.56
CCDC7-216ENST00000640058 JUNDP17535 347 aa11.57□□□□□ -0.56
CCDC7-216ENST00000640058 ZNF697Q5TEC3 545 aa11.57□□□□□ -0.56
CCDC7-216ENST00000640058 MYSM1Q5VVJ2 828 aa11.57□□□□□ -0.56
CCDC7-216ENST00000640058 CCDC24Q8N4L8 307 aa11.57□□□□□ -0.56
CCDC7-216ENST00000640058 MTMR2Q13614 643 aa11.56□□□□□ -0.56
CCDC7-216ENST00000640058 LIMD1Q9UGP4 676 aa11.56□□□□□ -0.56
CCDC7-216ENST00000640058 ZNF598Q86UK7 904 aaKnown RBP11.55□□□□□ -0.56
CCDC7-216ENST00000640058 PRR7Q8TB68 274 aa11.54□□□□□ -0.56
CCDC7-216ENST00000640058 CABLES1Q8TDN4 633 aa11.54□□□□□ -0.56
CCDC7-216ENST00000640058 FAM117AQ9C073 453 aa11.54□□□□□ -0.56
CCDC7-216ENST00000640058 PDZRN3Q9UPQ7 1066 aa11.54□□□□□ -0.56
CCDC7-216ENST00000640058 ZBTB24O43167 697 aaPredicted RBP11.53□□□□□ -0.56
CCDC7-216ENST00000640058 POLR3EQ9NVU0 708 aa11.53□□□□□ -0.56
CCDC7-216ENST00000640058 RPIAP49247 311 aa11.52□□□□□ -0.57
CCDC7-216ENST00000640058 NEUROD2Q15784 382 aa11.52□□□□□ -0.57
CCDC7-216ENST00000640058 TRIM67Q6ZTA4 783 aa11.52□□□□□ -0.57
CCDC7-216ENST00000640058 TNFRSF10AO00220 468 aa11.51□□□□□ -0.57
CCDC7-216ENST00000640058 HRCP23327 699 aa11.51□□□□□ -0.57
CCDC7-216ENST00000640058 GJA5P36382 358 aa11.51□□□□□ -0.57
CCDC7-216ENST00000640058 CLK2P49760 499 aaKnown RBP11.51□□□□□ -0.57
CCDC7-216ENST00000640058 ZBTB3Q9H5J0 574 aa11.51□□□□□ -0.57
CCDC7-216ENST00000640058 FOXC1Q12948 553 aa11.5□□□□□ -0.57
CCDC7-216ENST00000640058 Q6ZNB5 142 aa11.5□□□□□ -0.57
CCDC7-216ENST00000640058 NUDT12Q9BQG2 462 aa11.5□□□□□ -0.57
CCDC7-216ENST00000640058 SPDYE5A6NIY4 337 aa11.49□□□□□ -0.57
CCDC7-216ENST00000640058 CFAP99D6REC4 459 aa11.49□□□□□ -0.57
CCDC7-216ENST00000640058 QPCTQ16769 361 aa11.49□□□□□ -0.57
CCDC7-216ENST00000640058 NUTM2BA6NNL0 878 aaPredicted RBP11.48□□□□□ -0.57
CCDC7-216ENST00000640058 NUTM2EB1AL46 878 aaPredicted RBP11.48□□□□□ -0.57
CCDC7-216ENST00000640058 CD2BP2O95400 341 aaKnown RBP11.48□□□□□ -0.57
CCDC7-216ENST00000640058 NUTM2DQ5VT03 806 aaPredicted RBP11.48□□□□□ -0.57
CCDC7-216ENST00000640058 NUTM2AQ8IVF1 878 aaPredicted RBP11.48□□□□□ -0.57
CCDC7-216ENST00000640058 DDRGK1Q96HY6 314 aa11.48□□□□□ -0.57
CCDC7-216ENST00000640058 RSPH6AQ9H0K4 717 aa11.48□□□□□ -0.57
CCDC7-216ENST00000640058 PLEKHG3A1L390 1219 aa11.47□□□□□ -0.57
CCDC7-216ENST00000640058 NRG2O14511 850 aaPredicted RBP11.47□□□□□ -0.57
CCDC7-216ENST00000640058 TRIM32Q13049 653 aa11.47□□□□□ -0.57
CCDC7-216ENST00000640058 LAPTM4AQ15012 233 aa11.47□□□□□ -0.57
CCDC7-216ENST00000640058 TSC1Q92574 1164 aa11.47□□□□□ -0.57
CCDC7-216ENST00000640058 ATP1B4Q9UN42 357 aaPredicted RBP11.47□□□□□ -0.57
CCDC7-216ENST00000640058 PRPF38BQ5VTL8 546 aaKnown RBP11.46□□□□□ -0.57
CCDC7-216ENST00000640058 GDF9O60383 454 aa11.45□□□□□ -0.58
CCDC7-216ENST00000640058 CCNYL3P0C7X3 344 aa11.45□□□□□ -0.58
CCDC7-216ENST00000640058 PTCRAQ6ISU1 281 aaPredicted RBP11.45□□□□□ -0.58
CCDC7-216ENST00000640058 LILRB3O75022 631 aa11.44□□□□□ -0.58
CCDC7-216ENST00000640058 PRKCSHP14314 528 aaPredicted RBP11.44□□□□□ -0.58
CCDC7-216ENST00000640058 PTPRNQ16849 979 aa11.44□□□□□ -0.58
CCDC7-216ENST00000640058 PKD2L1Q9P0L9 805 aa11.44□□□□□ -0.58
CCDC7-216ENST00000640058 BRPF1P55201 1214 aaPredicted RBP11.43□□□□□ -0.58
CCDC7-216ENST00000640058 RTL5Q5HYW3 569 aaPredicted RBP11.43□□□□□ -0.58
CCDC7-216ENST00000640058 PRR20EP86478 221 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 PRR20CP86479 221 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 PRR20DP86480 221 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 PRR20BP86481 221 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 PRR20AP86496 221 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 TUSC1Q2TAM9 212 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 SH3D19Q5HYK7 790 aa11.42□□□□□ -0.58
CCDC7-216ENST00000640058 PROCA1Q8NCQ7 364 aaPredicted RBP11.42□□□□□ -0.58
CCDC7-216ENST00000640058 SKIV2LQ15477 1246 aaKnown RBP11.41□□□□□ -0.58
CCDC7-216ENST00000640058 DESI1Q6ICB0 168 aa11.41□□□□□ -0.58
CCDC7-216ENST00000640058 CTHP32929 405 aa11.4□□□□□ -0.58
CCDC7-216ENST00000640058 IL27Q8NEV9 243 aa11.4□□□□□ -0.58
CCDC7-216ENST00000640058 LYPD8Q6UX82 237 aa11.39□□□□□ -0.59
CCDC7-216ENST00000640058 EVA1BQ9NVM1 165 aa11.39□□□□□ -0.59
CCDC7-216ENST00000640058 FAM187AA6NFU0 413 aa11.38□□□□□ -0.59
CCDC7-216ENST00000640058 PER1O15534 1290 aaPredicted RBP11.38□□□□□ -0.59
CCDC7-216ENST00000640058 SKOR1P84550 965 aa11.38□□□□□ -0.59
CCDC7-216ENST00000640058 KCNH2Q12809 1159 aa11.38□□□□□ -0.59
CCDC7-216ENST00000640058 LINC01559Q495D7 138 aa11.38□□□□□ -0.59
CCDC7-216ENST00000640058 FBXO31Q5XUX0 539 aaPredicted RBP11.38□□□□□ -0.59
CCDC7-216ENST00000640058 UNC93B1Q9H1C4 597 aa11.38□□□□□ -0.59
CCDC7-216ENST00000640058 LCE2BO14633 110 aa11.37□□□□□ -0.59
CCDC7-216ENST00000640058 MAP10Q9P2G4 905 aa11.37□□□□□ -0.59
CCDC7-216ENST00000640058 CYP4X1Q8N118 509 aa11.36□□□□□ -0.59
CCDC7-216ENST00000640058 WNT7AO00755 349 aa11.35□□□□□ -0.59
CCDC7-216ENST00000640058 PKDCCQ504Y2 493 aa11.35□□□□□ -0.59
CCDC7-216ENST00000640058 HELBQ8NG08 1087 aaPredicted RBP11.35□□□□□ -0.59
CCDC7-216ENST00000640058 MRGPRX2Q96LB1 330 aa11.35□□□□□ -0.59
CCDC7-216ENST00000640058 RC3H1Q5TC82 1133 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms