RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 RUNDC1Q96C34 613 aa14□□□□□ -0.17
SNIP1-204ENST00000638725 POGKQ9P215 609 aa14□□□□□ -0.17
SNIP1-204ENST00000638725 MROH2AA6NES4 1674 aa13.99□□□□□ -0.17
SNIP1-204ENST00000638725 PMFBP1Q8TBY8 1022 aa13.99□□□□□ -0.17
SNIP1-204ENST00000638725 IQSEC2Q5JU85 1478 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 SLC12A5Q9H2X9 1139 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 INO80Q9ULG1 1556 aaPredicted RBP13.98□□□□□ -0.17
SNIP1-204ENST00000638725 PDZRN3Q9UPQ7 1066 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 MYO3AQ8NEV4 1616 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 MROH1Q8NDA8 1641 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 UHRF1BP1LA0JNW5 1464 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 KIF1BO60333 1816 aa13.98□□□□□ -0.17
SNIP1-204ENST00000638725 IFT172Q9UG01 1749 aa13.97□□□□□ -0.17
SNIP1-204ENST00000638725 SBNO2Q9Y2G9 1366 aa13.97□□□□□ -0.17
SNIP1-204ENST00000638725 TRAK1Q9UPV9 953 aa13.97□□□□□ -0.17
SNIP1-204ENST00000638725 ARAP3Q8WWN8 1544 aa13.97□□□□□ -0.17
SNIP1-204ENST00000638725 PHF23Q9BUL5 403 aaPredicted RBP13.96□□□□□ -0.17
SNIP1-204ENST00000638725 NOS1P29475 1434 aa13.96□□□□□ -0.17
SNIP1-204ENST00000638725 NRXN1Q9ULB1 1477 aa13.95□□□□□ -0.18
SNIP1-204ENST00000638725 CHGAP10645 457 aaKnown RBP13.95□□□□□ -0.18
SNIP1-204ENST00000638725 MTHFSP49914 203 aa13.95□□□□□ -0.18
SNIP1-204ENST00000638725 TBC1D32Q96NH3 1257 aa13.95□□□□□ -0.18
SNIP1-204ENST00000638725 ANTXR1Q9H6X2 564 aa13.95□□□□□ -0.18
SNIP1-204ENST00000638725 FANCAO15360 1455 aa13.95□□□□□ -0.18
SNIP1-204ENST00000638725 WDR63Q8IWG1 891 aa13.94□□□□□ -0.18
SNIP1-204ENST00000638725 UPF2Q9HAU5 1272 aaKnown RBP13.94□□□□□ -0.18
SNIP1-204ENST00000638725 EFCAB6Q5THR3 1501 aa13.94□□□□□ -0.18
SNIP1-204ENST00000638725 TBC1D2Q9BYX2 928 aa13.94□□□□□ -0.18
SNIP1-204ENST00000638725 AAMPQ13685 434 aa13.93□□□□□ -0.18
SNIP1-204ENST00000638725 ZNF518AQ6AHZ1 1483 aa13.92□□□□□ -0.18
SNIP1-204ENST00000638725 PPRC1Q5VV67 1664 aaKnown RBP13.92□□□□□ -0.18
SNIP1-204ENST00000638725 RWDD1Q9H446 243 aaPredicted RBP13.92□□□□□ -0.18
SNIP1-204ENST00000638725 ABCA9Q8IUA7 1624 aa13.92□□□□□ -0.18
SNIP1-204ENST00000638725 TMEM132EQ6IEE7 984 aa13.92□□□□□ -0.18
SNIP1-204ENST00000638725 QRICH2Q9H0J4 1663 aa13.92□□□□□ -0.18
SNIP1-204ENST00000638725 ADGRL1O94910 1474 aa13.91□□□□□ -0.18
SNIP1-204ENST00000638725 SETBP1Q9Y6X0 1596 aa13.91□□□□□ -0.18
SNIP1-204ENST00000638725 ZMYM3Q14202 1370 aa13.91□□□□□ -0.18
SNIP1-204ENST00000638725 ZC3H13Q5T200 1668 aaKnown RBP13.91□□□□□ -0.18
SNIP1-204ENST00000638725 CCDC27Q2M243 656 aa13.91□□□□□ -0.18
SNIP1-204ENST00000638725 FAM43AQ8N2R8 423 aa13.91□□□□□ -0.18
SNIP1-204ENST00000638725 CFAP53Q96M91 514 aa13.91□□□□□ -0.18
SNIP1-204ENST00000638725 MVPQ14764 893 aaKnown RBP13.9□□□□□ -0.18
SNIP1-204ENST00000638725 ADGRB3O60242 1522 aa13.9□□□□□ -0.18
SNIP1-204ENST00000638725 SPRYD3Q8NCJ5 442 aa13.9□□□□□ -0.18
SNIP1-204ENST00000638725 MYH16Q9H6N6 1097 aa13.89□□□□□ -0.19
SNIP1-204ENST00000638725 U2AF1L5P0DN76 240 aaPredicted RBP13.89□□□□□ -0.19
SNIP1-204ENST00000638725 U2AF1Q01081 240 aaKnown RBP eCLIP13.89□□□□□ -0.19
SNIP1-204ENST00000638725 C14orf93Q9H972 538 aaKnown RBP13.89□□□□□ -0.19
SNIP1-204ENST00000638725 ADGRB1O14514 1584 aa13.88□□□□□ -0.19
SNIP1-204ENST00000638725 ZKSCAN2Q63HK3 967 aa13.88□□□□□ -0.19
SNIP1-204ENST00000638725 FTSJ3Q8IY81 847 aaKnown RBP13.88□□□□□ -0.19
SNIP1-204ENST00000638725 TSR2Q969E8 191 aaKnown RBP13.88□□□□□ -0.19
SNIP1-204ENST00000638725 USP32Q8NFA0 1604 aa13.88□□□□□ -0.19
SNIP1-204ENST00000638725 DZIP1LQ8IYY4 767 aaKnown RBP13.87□□□□□ -0.19
SNIP1-204ENST00000638725 ARXQ96QS3 562 aa13.86□□□□□ -0.19
SNIP1-204ENST00000638725 EIF5BO60841 1220 aaKnown RBP13.86□□□□□ -0.19
SNIP1-204ENST00000638725 MFAP1P55081 439 aaKnown RBP13.86□□□□□ -0.19
SNIP1-204ENST00000638725 CFAP65Q6ZU64 1925 aaKnown RBP13.86□□□□□ -0.19
SNIP1-204ENST00000638725 PPLO60437 1756 aa13.85□□□□□ -0.19
SNIP1-204ENST00000638725 SMC4Q9NTJ3 1288 aa13.85□□□□□ -0.19
SNIP1-204ENST00000638725 KIDINS220Q9ULH0 1771 aa13.85□□□□□ -0.19
SNIP1-204ENST00000638725 LMTK2Q8IWU2 1503 aa13.85□□□□□ -0.19
SNIP1-204ENST00000638725 EXOSC9Q06265 439 aaKnown RBP13.85□□□□□ -0.19
SNIP1-204ENST00000638725 L1TD1Q5T7N2 865 aaKnown RBP13.85□□□□□ -0.19
SNIP1-204ENST00000638725 ADGRB2O60241 1585 aa13.85□□□□□ -0.19
SNIP1-204ENST00000638725 C22orf23Q9BZE7 217 aa13.84□□□□□ -0.19
SNIP1-204ENST00000638725 TRIM27P14373 513 aa13.84□□□□□ -0.19
SNIP1-204ENST00000638725 NPATQ14207 1427 aa13.84□□□□□ -0.19
SNIP1-204ENST00000638725 NUTM2DQ5VT03 806 aaPredicted RBP13.83□□□□□ -0.19
SNIP1-204ENST00000638725 ANKRD36BQ8N2N9 1353 aa13.83□□□□□ -0.19
SNIP1-204ENST00000638725 ITPRIPQ8IWB1 547 aa13.83□□□□□ -0.2
SNIP1-204ENST00000638725 TULP4Q9NRJ4 1543 aa13.83□□□□□ -0.2
SNIP1-204ENST00000638725 MCM4P33991 863 aa13.83□□□□□ -0.2
SNIP1-204ENST00000638725 RRAGDQ9NQL2 400 aaPredicted RBP13.83□□□□□ -0.2
SNIP1-204ENST00000638725 CD109Q6YHK3 1445 aa13.82□□□□□ -0.2
SNIP1-204ENST00000638725 EVC2Q86UK5 1308 aa13.82□□□□□ -0.2
SNIP1-204ENST00000638725 U2SURPO15042 1029 aaKnown RBP13.82□□□□□ -0.2
SNIP1-204ENST00000638725 NCBP3Q53F19 620 aaKnown RBP13.82□□□□□ -0.2
SNIP1-204ENST00000638725 SSH1Q8WYL5 1049 aa13.82□□□□□ -0.2
SNIP1-204ENST00000638725 GZF1Q9H116 711 aaPredicted RBP13.82□□□□□ -0.2
SNIP1-204ENST00000638725 CABP2Q9NPB3 220 aa13.82□□□□□ -0.2
SNIP1-204ENST00000638725 NSD2O96028 1365 aa13.82□□□□□ -0.2
SNIP1-204ENST00000638725 GGT6Q6P531 493 aa13.81□□□□□ -0.2
SNIP1-204ENST00000638725 GLI2P10070 1586 aa13.81□□□□□ -0.2
SNIP1-204ENST00000638725 CT47B1P0C2W7 299 aaPredicted RBP13.81□□□□□ -0.2
SNIP1-204ENST00000638725 HDAC1Q13547 482 aaPredicted RBP13.81□□□□□ -0.2
SNIP1-204ENST00000638725 SAFB2Q14151 953 aaKnown RBP eCLIP13.81□□□□□ -0.2
SNIP1-204ENST00000638725 TMPOP42166 694 aaKnown RBP13.8□□□□□ -0.2
SNIP1-204ENST00000638725 ATF7IPQ6VMQ6 1270 aa13.8□□□□□ -0.2
SNIP1-204ENST00000638725 PLEKHF1Q96S99 279 aa13.8□□□□□ -0.2
SNIP1-204ENST00000638725 RSPH6AQ9H0K4 717 aa13.8□□□□□ -0.2
SNIP1-204ENST00000638725 CHMP5Q9NZZ3 219 aa13.8□□□□□ -0.2
SNIP1-204ENST00000638725 DDX19BQ9UMR2 479 aa13.8□□□□□ -0.2
SNIP1-204ENST00000638725 TRIM35Q9UPQ4 493 aa13.8□□□□□ -0.2
SNIP1-204ENST00000638725 XRCC6P12956 609 aaKnown RBP eCLIP13.8□□□□□ -0.2
SNIP1-204ENST00000638725 GOLGA6L3A6NEY3 463 aa13.79□□□□□ -0.2
SNIP1-204ENST00000638725 NOB1Q9ULX3 412 aaKnown RBP13.79□□□□□ -0.2
SNIP1-204ENST00000638725 GGNBP2Q9H3C7 697 aa13.79□□□□□ -0.2
SNIP1-204ENST00000638725 ARHGEF28Q8N1W1 1705 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms