RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 ZNF521Q96K83 1311 aa28.44■■■□□ 2.14
CLN6-224ENST00000638076 POLR3AO14802 1390 aaPredicted RBP28.43■■■□□ 2.14
CLN6-224ENST00000638076 KIF13AQ9H1H9 1805 aa28.42■■■□□ 2.14
CLN6-224ENST00000638076 CGNL1Q0VF96 1302 aa28.42■■■□□ 2.14
CLN6-224ENST00000638076 ANKRD36BQ8N2N9 1353 aa28.42■■■□□ 2.14
CLN6-224ENST00000638076 USP32Q8NFA0 1604 aa28.42■■■□□ 2.14
CLN6-224ENST00000638076 TNNT2P45379 298 aaPredicted RBP28.41■■■□□ 2.14
CLN6-224ENST00000638076 EXOC6Q8TAG9 804 aa28.41■■■□□ 2.14
CLN6-224ENST00000638076 YTHDC2Q9H6S0 1430 aaKnown RBP28.4■■■□□ 2.14
CLN6-224ENST00000638076 PTPRMP28827 1452 aa28.4■■■□□ 2.14
CLN6-224ENST00000638076 GOLGA2Q08379 1002 aa28.4■■■□□ 2.14
CLN6-224ENST00000638076 ARHGEF40Q8TER5 1519 aa28.39■■■□□ 2.14
CLN6-224ENST00000638076 SPATA31D1Q6ZQQ2 1576 aa28.39■■■□□ 2.14
CLN6-224ENST00000638076 DUSP27Q5VZP5 1158 aa28.38■■■□□ 2.13
CLN6-224ENST00000638076 ALKQ9UM73 1620 aa28.38■■■□□ 2.13
CLN6-224ENST00000638076 APAF1O14727 1248 aa28.38■■■□□ 2.13
CLN6-224ENST00000638076 PRAM1Q96QH2 718 aa28.38■■■□□ 2.13
CLN6-224ENST00000638076 SRPK2P78362 688 aaKnown RBP28.37■■■□□ 2.13
CLN6-224ENST00000638076 A2ML1A8K2U0 1454 aa28.36■■■□□ 2.13
CLN6-224ENST00000638076 POGKQ9P215 609 aa28.36■■■□□ 2.13
CLN6-224ENST00000638076 PLIN1O60240 522 aa28.35■■■□□ 2.13
CLN6-224ENST00000638076 MINK1Q8N4C8 1332 aaPredicted RBP28.34■■■□□ 2.13
CLN6-224ENST00000638076 NINLQ9Y2I6 1382 aa28.32■■■□□ 2.12
CLN6-224ENST00000638076 NSD2O96028 1365 aa28.31■■■□□ 2.12
CLN6-224ENST00000638076 SLFN5Q08AF3 891 aa28.31■■■□□ 2.12
CLN6-224ENST00000638076 A0A1W2PP64 1363 aa28.3■■■□□ 2.12
CLN6-224ENST00000638076 RIMS2Q9UQ26 1411 aa28.3■■■□□ 2.12
CLN6-224ENST00000638076 ATAD2Q6PL18 1390 aa28.29■■■□□ 2.12
CLN6-224ENST00000638076 MTHFSP49914 203 aa28.29■■■□□ 2.12
CLN6-224ENST00000638076 ESF1Q9H501 851 aaKnown RBP28.29■■■□□ 2.12
CLN6-224ENST00000638076 SHPRHQ149N8 1683 aa28.29■■■□□ 2.12
CLN6-224ENST00000638076 TRMT2AQ8IZ69 625 aaKnown RBP28.27■■■□□ 2.12
CLN6-224ENST00000638076 NGEFQ8N5V2 710 aa28.27■■■□□ 2.12
CLN6-224ENST00000638076 ZMYM3Q14202 1370 aa28.26■■■□□ 2.11
CLN6-224ENST00000638076 SPINK5Q9NQ38 1064 aaPredicted RBP28.26■■■□□ 2.11
CLN6-224ENST00000638076 ABCC11Q96J66 1382 aa28.25■■■□□ 2.11
CLN6-224ENST00000638076 CFAP53Q96M91 514 aa28.24■■■□□ 2.11
CLN6-224ENST00000638076 CDK19Q9BWU1 502 aa28.23■■■□□ 2.11
CLN6-224ENST00000638076 TERF2IPQ9NYB0 399 aa28.23■■■□□ 2.11
CLN6-224ENST00000638076 CRBNQ96SW2 442 aa28.22■■■□□ 2.11
CLN6-224ENST00000638076 E9PSI1 815 aa28.21■■■□□ 2.11
CLN6-224ENST00000638076 RUNDC1Q96C34 613 aa28.2■■■□□ 2.1
CLN6-224ENST00000638076 CD163L1Q9NR16 1453 aa28.2■■■□□ 2.1
CLN6-224ENST00000638076 FANCIQ9NVI1 1328 aa28.19■■■□□ 2.1
CLN6-224ENST00000638076 C20orf194Q5TEA3 1177 aa28.19■■■□□ 2.1
CLN6-224ENST00000638076 DMRT2Q9Y5R5 561 aa28.19■■■□□ 2.1
CLN6-224ENST00000638076 DLC1Q96QB1 1528 aa28.19■■■□□ 2.1
CLN6-224ENST00000638076 SETD1AO15047 1707 aaKnown RBP28.19■■■□□ 2.1
CLN6-224ENST00000638076 NKTRP30414 1462 aaKnown RBP28.19■■■□□ 2.1
CLN6-224ENST00000638076 WAPLQ7Z5K2 1190 aa28.18■■■□□ 2.1
CLN6-224ENST00000638076 GGNBP2Q9H3C7 697 aa28.18■■■□□ 2.1
CLN6-224ENST00000638076 WWC1Q8IX03 1113 aa28.18■■■□□ 2.1
CLN6-224ENST00000638076 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.17■■■□□ 2.1
CLN6-224ENST00000638076 HDGFL2Q7Z4V5 671 aaPredicted RBP28.15■■■□□ 2.1
CLN6-224ENST00000638076 FYB1O15117 783 aa28.14■■■□□ 2.1
CLN6-224ENST00000638076 CABP1Q9NZU7 370 aa28.14■■■□□ 2.1
CLN6-224ENST00000638076 NEUROD2Q15784 382 aa28.14■■■□□ 2.09
CLN6-224ENST00000638076 TCP11L2Q8N4U5 519 aa28.14■■■□□ 2.09
CLN6-224ENST00000638076 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.14■■■□□ 2.09
CLN6-224ENST00000638076 NRXN3Q9Y4C0 1643 aa28.13■■■□□ 2.09
CLN6-224ENST00000638076 IQSEC2Q5JU85 1478 aa28.13■■■□□ 2.09
CLN6-224ENST00000638076 RRP7AQ9Y3A4 280 aaKnown RBP28.13■■■□□ 2.09
CLN6-224ENST00000638076 TNRQ92752 1358 aa28.12■■■□□ 2.09
CLN6-224ENST00000638076 NLRP1Q9C000 1473 aa28.11■■■□□ 2.09
CLN6-224ENST00000638076 MED14O60244 1454 aa28.1■■■□□ 2.09
CLN6-224ENST00000638076 METP08581 1390 aa28.1■■■□□ 2.09
CLN6-224ENST00000638076 U2AF1L5P0DN76 240 aaPredicted RBP28.09■■■□□ 2.09
CLN6-224ENST00000638076 U2AF1Q01081 240 aaKnown RBP eCLIP28.09■■■□□ 2.09
CLN6-224ENST00000638076 HDGFP51858 240 aaKnown RBP28.08■■■□□ 2.09
CLN6-224ENST00000638076 ANKRD26Q9UPS8 1709 aa28.07■■■□□ 2.08
CLN6-224ENST00000638076 PHF23Q9BUL5 403 aaPredicted RBP28.07■■■□□ 2.08
CLN6-224ENST00000638076 MSH5O43196 834 aa28.06■■■□□ 2.08
CLN6-224ENST00000638076 BCAR3O75815 825 aa28.05■■■□□ 2.08
CLN6-224ENST00000638076 TXNDC2Q86VQ3 553 aa28.04■■■□□ 2.08
CLN6-224ENST00000638076 CCDC27Q2M243 656 aa28.03■■■□□ 2.08
CLN6-224ENST00000638076 WDR63Q8IWG1 891 aa28.02■■■□□ 2.08
CLN6-224ENST00000638076 ATP7BP35670 1465 aa28.02■■■□□ 2.08
CLN6-224ENST00000638076 TMEM2Q9UHN6 1383 aa28.02■■■□□ 2.08
CLN6-224ENST00000638076 COL3A1P02461 1466 aaPredicted RBP28.02■■■□□ 2.08
CLN6-224ENST00000638076 WASLO00401 505 aaPredicted RBP28.01■■■□□ 2.07
CLN6-224ENST00000638076 U2SURPO15042 1029 aaKnown RBP28■■■□□ 2.07
CLN6-224ENST00000638076 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28■■■□□ 2.07
CLN6-224ENST00000638076 UBR1Q8IWV7 1749 aa28■■■□□ 2.07
CLN6-224ENST00000638076 TCERG1O14776 1098 aaKnown RBP28■■■□□ 2.07
CLN6-224ENST00000638076 ANP32EQ9BTT0 268 aa28■■■□□ 2.07
CLN6-224ENST00000638076 KIF20BQ96Q89 1820 aa27.99■■■□□ 2.07
CLN6-224ENST00000638076 NCBP3Q53F19 620 aaKnown RBP27.98■■■□□ 2.07
CLN6-224ENST00000638076 ADGRB2O60241 1585 aa27.97■■■□□ 2.07
CLN6-224ENST00000638076 TECPR2O15040 1411 aa27.97■■■□□ 2.07
CLN6-224ENST00000638076 FAM135BQ49AJ0 1406 aa27.97■■■□□ 2.07
CLN6-224ENST00000638076 SIRT1Q96EB6 747 aa27.96■■■□□ 2.07
CLN6-224ENST00000638076 KNDC1Q76NI1 1749 aa27.96■■■□□ 2.07
CLN6-224ENST00000638076 PPIP5K1Q6PFW1 1433 aa27.95■■■□□ 2.07
CLN6-224ENST00000638076 PLEKHF1Q96S99 279 aa27.95■■■□□ 2.07
CLN6-224ENST00000638076 PNPLA6Q8IY17 1366 aa27.94■■■□□ 2.06
CLN6-224ENST00000638076 KDM2BQ8NHM5 1336 aa27.93■■■□□ 2.06
CLN6-224ENST00000638076 DIAPH1O60610 1272 aaKnown RBP27.93■■■□□ 2.06
CLN6-224ENST00000638076 CEBPAP49715 358 aaPredicted RBP27.92■■■□□ 2.06
CLN6-224ENST00000638076 CPSF1Q10570 1443 aaKnown RBP27.92■■■□□ 2.06
CLN6-224ENST00000638076 CPS1P31327 1500 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 336.2 ms