RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ZSCAN29Q8IWY8 852 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-217ENST00000637988 RAPGEF2Q9Y4G8 1499 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 KRT18P05783 430 aaKnown RBP7.4□□□□□ -1.23
SCN1A-217ENST00000637988 TSPYL4Q9UJ04 414 aa7.4□□□□□ -1.23
SCN1A-217ENST00000637988 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 FKBP5Q13451 457 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 SPG7Q9UQ90 795 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 REC8O95072 547 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 CABP4P57796 275 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 PPP4R3AQ6IN85 833 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 DIAPH1O60610 1272 aaKnown RBP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 ANKRD18AQ8IVF6 992 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 MTMR7Q9Y216 660 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 MYCNP04198 464 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 AIMP1Q12904 312 aaKnown RBP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 TXNDC2Q86VQ3 553 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 CCAR2Q8N163 923 aaKnown RBP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 NECTIN2Q92692 538 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 MPHOSPH6Q99547 160 aaKnown RBP7.39□□□□□ -1.23
SCN1A-217ENST00000637988 FANCD2Q9BXW9 1451 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 FAM177BA6PVY3 158 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 TNIP1Q15025 636 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 MIER1Q8N108 512 aa7.39□□□□□ -1.23
SCN1A-217ENST00000637988 CCDC146Q8IYE0 955 aa7.38□□□□□ -1.23
SCN1A-217ENST00000637988 NOP58Q9Y2X3 529 aaKnown RBP7.38□□□□□ -1.23
SCN1A-217ENST00000637988 MPHOSPH8Q99549 860 aa7.38□□□□□ -1.23
SCN1A-217ENST00000637988 CADPSQ9ULU8 1353 aa7.38□□□□□ -1.23
SCN1A-217ENST00000637988 NLRP6P59044 892 aa7.38□□□□□ -1.23
SCN1A-217ENST00000637988 RUFY1Q96T51 708 aa7.38□□□□□ -1.23
SCN1A-217ENST00000637988 KIF15Q9NS87 1388 aa7.38□□□□□ -1.23
SCN1A-217ENST00000637988 ANKRD45Q5TZF3 282 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 CRBNQ96SW2 442 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 ZNF287Q9HBT7 754 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 AK7Q96M32 723 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 TTC39AQ5SRH9 613 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 HSPA5P11021 654 aaKnown RBP7.37□□□□□ -1.23
SCN1A-217ENST00000637988 CCDC158Q5M9N0 1113 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 SCLT1Q96NL6 688 aa7.37□□□□□ -1.23
SCN1A-217ENST00000637988 OLFM4Q6UX06 510 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 NACAP1Q9BZK3 213 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 WDR70Q9NW82 654 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 RRBP1Q9P2E9 1410 aaKnown RBP7.36□□□□□ -1.23
SCN1A-217ENST00000637988 NUTM2GQ5VZR2 741 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 GAS2L2Q8NHY3 880 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 DDX54Q8TDD1 881 aaKnown RBP7.36□□□□□ -1.23
SCN1A-217ENST00000637988 PDCL3Q9H2J4 239 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 IBSPP21815 317 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-217ENST00000637988 PRDM11Q9NQV5 511 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 MAGEC2Q9UBF1 373 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-217ENST00000637988 BEGAINQ9BUH8 593 aa7.36□□□□□ -1.23
SCN1A-217ENST00000637988 WIZO95785 1651 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 API5Q9BZZ5 524 aaKnown RBP7.35□□□□□ -1.23
SCN1A-217ENST00000637988 PATL2C9JE40 543 aaKnown RBP7.35□□□□□ -1.23
SCN1A-217ENST00000637988 HOMER1Q86YM7 354 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 HIP1O00291 1037 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 PSMA5P28066 241 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 ZNF76P36508 570 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 NLRP13Q86W25 1043 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 TOP2AP11388 1531 aaKnown RBP7.35□□□□□ -1.23
SCN1A-217ENST00000637988 NGLY1Q96IV0 654 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 CUX1P39880 1505 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 NAT10Q9H0A0 1025 aaKnown RBP7.35□□□□□ -1.23
SCN1A-217ENST00000637988 STARD3NLO95772 234 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 ZKSCAN2Q63HK3 967 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 ZSCAN25Q6NSZ9 544 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 CLUAP1Q96AJ1 413 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 GAPVD1Q14C86 1478 aa7.35□□□□□ -1.23
SCN1A-217ENST00000637988 SOGA3Q5TF21 947 aa7.34□□□□□ -1.23
SCN1A-217ENST00000637988 CCDC30Q5VVM6 783 aa7.34□□□□□ -1.23
SCN1A-217ENST00000637988 STAC3Q96MF2 364 aa7.34□□□□□ -1.23
SCN1A-217ENST00000637988 CA8P35219 290 aa7.34□□□□□ -1.23
SCN1A-217ENST00000637988 ELL2O00472 640 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-217ENST00000637988 RPGRQ92834 1020 aaKnown RBP7.34□□□□□ -1.23
SCN1A-217ENST00000637988 LRPPRCP42704 1394 aaKnown RBP7.34□□□□□ -1.23
SCN1A-217ENST00000637988 FYCO1Q9BQS8 1478 aa7.34□□□□□ -1.23
SCN1A-217ENST00000637988 UBTFL1P0CB47 393 aaPredicted RBP7.34□□□□□ -1.24
SCN1A-217ENST00000637988 RRP7AQ9Y3A4 280 aaKnown RBP7.34□□□□□ -1.24
SCN1A-217ENST00000637988 CCDC88BA6NC98 1476 aa7.34□□□□□ -1.24
SCN1A-217ENST00000637988 E9PSI1 815 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 GNAI1P63096 354 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 SLF2Q8IX21 1173 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 LUC7LQ9NQ29 371 aaKnown RBP7.33□□□□□ -1.24
SCN1A-217ENST00000637988 MYO1BO43795 1136 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 POTEJP0CG39 1038 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 CHMP4BP1P59074 171 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 WDR78Q5VTH9 848 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 CNTROBQ8N137 903 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 IGHMBP2P38935 993 aaKnown RBP7.33□□□□□ -1.24
SCN1A-217ENST00000637988 TXLNBQ8N3L3 684 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 BICD2Q8TD16 824 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 CCDC57Q2TAC2 916 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 CCDC150Q8NCX0 1101 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 DDX11L8A8MPP1 907 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 RIPK4P57078 832 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 SEPT7Q16181 437 aaKnown RBP7.33□□□□□ -1.24
SCN1A-217ENST00000637988 CCER2I3L3R5 266 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 PIP4K2AP48426 406 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-217ENST00000637988 DCTN1Q14203 1278 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 EHMT1Q9H9B1 1298 aa7.33□□□□□ -1.24
SCN1A-217ENST00000637988 DDX19BQ9UMR2 479 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms