RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 LRPPRCP42704 1394 aaKnown RBP24.97■■□□□ 1.59
CLN3-263ENST00000637871 EIF3AQ14152 1382 aaKnown RBP24.97■■□□□ 1.59
CLN3-263ENST00000637871 KNDC1Q76NI1 1749 aa24.97■■□□□ 1.59
CLN3-263ENST00000637871 ROBO2Q9HCK4 1378 aa24.96■■□□□ 1.59
CLN3-263ENST00000637871 TRAK1Q9UPV9 953 aa24.94■■□□□ 1.58
CLN3-263ENST00000637871 CPS1P31327 1500 aa24.94■■□□□ 1.58
CLN3-263ENST00000637871 NKTRP30414 1462 aaKnown RBP24.94■■□□□ 1.58
CLN3-263ENST00000637871 ARHGEF28Q8N1W1 1705 aaKnown RBP24.94■■□□□ 1.58
CLN3-263ENST00000637871 PELP1Q8IZL8 1130 aaKnown RBP24.93■■□□□ 1.58
CLN3-263ENST00000637871 XIRP1Q702N8 1843 aaKnown RBP24.92■■□□□ 1.58
CLN3-263ENST00000637871 LRRC7Q96NW7 1537 aa24.92■■□□□ 1.58
CLN3-263ENST00000637871 SUPT16HQ9Y5B9 1047 aaKnown RBP24.92■■□□□ 1.58
CLN3-263ENST00000637871 PLEKHH1Q9ULM0 1364 aa24.91■■□□□ 1.58
CLN3-263ENST00000637871 TECPR2O15040 1411 aa24.91■■□□□ 1.58
CLN3-263ENST00000637871 BRD4O60885 1362 aaPredicted RBP24.9■■□□□ 1.58
CLN3-263ENST00000637871 ABCC11Q96J66 1382 aa24.9■■□□□ 1.58
CLN3-263ENST00000637871 NEFLP07196 543 aa24.9■■□□□ 1.58
CLN3-263ENST00000637871 PTCH1Q13635 1447 aa24.9■■□□□ 1.58
CLN3-263ENST00000637871 WAPLQ7Z5K2 1190 aa24.9■■□□□ 1.58
CLN3-263ENST00000637871 PROSER2Q86WR7 435 aaPredicted RBP24.9■■□□□ 1.58
CLN3-263ENST00000637871 MYBBP1AQ9BQG0 1328 aaKnown RBP24.89■■□□□ 1.58
CLN3-263ENST00000637871 CCDC184Q52MB2 194 aa24.89■■□□□ 1.57
CLN3-263ENST00000637871 ZBED9Q6R2W3 1325 aa24.89■■□□□ 1.57
CLN3-263ENST00000637871 TMEM94Q12767 1356 aa24.88■■□□□ 1.57
CLN3-263ENST00000637871 SAFB2Q14151 953 aaKnown RBP eCLIP24.88■■□□□ 1.57
CLN3-263ENST00000637871 DLC1Q96QB1 1528 aa24.86■■□□□ 1.57
CLN3-263ENST00000637871 FAM9BQ8IZU0 186 aa24.86■■□□□ 1.57
CLN3-263ENST00000637871 PRAM1Q96QH2 718 aa24.86■■□□□ 1.57
CLN3-263ENST00000637871 NALCNQ8IZF0 1738 aa24.86■■□□□ 1.57
CLN3-263ENST00000637871 DISP3Q9P2K9 1392 aa24.85■■□□□ 1.57
CLN3-263ENST00000637871 PER1O15534 1290 aaPredicted RBP24.84■■□□□ 1.57
CLN3-263ENST00000637871 TMC1Q8TDI8 760 aa24.84■■□□□ 1.57
CLN3-263ENST00000637871 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.84■■□□□ 1.57
CLN3-263ENST00000637871 PARD3Q8TEW0 1356 aa24.82■■□□□ 1.56
CLN3-263ENST00000637871 FAM135BQ49AJ0 1406 aa24.81■■□□□ 1.56
CLN3-263ENST00000637871 QRICH2Q9H0J4 1663 aa24.81■■□□□ 1.56
CLN3-263ENST00000637871 POGKQ9P215 609 aa24.81■■□□□ 1.56
CLN3-263ENST00000637871 C14orf37Q86TY3 774 aa24.8■■□□□ 1.56
CLN3-263ENST00000637871 NLRP13Q86W25 1043 aa24.8■■□□□ 1.56
CLN3-263ENST00000637871 SBNO2Q9Y2G9 1366 aa24.8■■□□□ 1.56
CLN3-263ENST00000637871 PNISRQ8TF01 805 aaKnown RBP24.79■■□□□ 1.56
CLN3-263ENST00000637871 INSRP06213 1382 aa24.78■■□□□ 1.56
CLN3-263ENST00000637871 MINK1Q8N4C8 1332 aaPredicted RBP24.76■■□□□ 1.55
CLN3-263ENST00000637871 ERICH6BQ5W0A0 696 aa24.76■■□□□ 1.55
CLN3-263ENST00000637871 PANK3Q9H999 370 aa24.76■■□□□ 1.55
CLN3-263ENST00000637871 ADGRL3Q9HAR2 1447 aa24.76■■□□□ 1.55
CLN3-263ENST00000637871 CENPJQ9HC77 1338 aaPredicted RBP24.76■■□□□ 1.55
CLN3-263ENST00000637871 CERKQ8TCT0 537 aa24.75■■□□□ 1.55
CLN3-263ENST00000637871 SIRT1Q96EB6 747 aa24.75■■□□□ 1.55
CLN3-263ENST00000637871 NPC1L1Q9UHC9 1359 aa24.72■■□□□ 1.55
CLN3-263ENST00000637871 FKBP8Q14318 412 aa24.72■■□□□ 1.55
CLN3-263ENST00000637871 MSH6P52701 1360 aa24.72■■□□□ 1.55
CLN3-263ENST00000637871 NCOA3Q9Y6Q9 1424 aa24.7■■□□□ 1.54
CLN3-263ENST00000637871 ADGRB2O60241 1585 aa24.7■■□□□ 1.54
CLN3-263ENST00000637871 CDC42BPGQ6DT37 1551 aa24.69■■□□□ 1.54
CLN3-263ENST00000637871 KNSTRNQ9Y448 316 aa24.68■■□□□ 1.54
CLN3-263ENST00000637871 TULP4Q9NRJ4 1543 aa24.68■■□□□ 1.54
CLN3-263ENST00000637871 C19orf44Q9H6X5 657 aa24.68■■□□□ 1.54
CLN3-263ENST00000637871 NUTM2FA1L443 756 aa24.67■■□□□ 1.54
CLN3-263ENST00000637871 PUS7Q96PZ0 661 aaKnown RBP24.67■■□□□ 1.54
CLN3-263ENST00000637871 FMN2Q9NZ56 1722 aa24.65■■□□□ 1.54
CLN3-263ENST00000637871 IQSEC2Q5JU85 1478 aa24.65■■□□□ 1.54
CLN3-263ENST00000637871 ATF3P18847 181 aa24.63■■□□□ 1.53
CLN3-263ENST00000637871 DCCP43146 1447 aa24.63■■□□□ 1.53
CLN3-263ENST00000637871 SMG6Q86US8 1419 aaKnown RBP24.63■■□□□ 1.53
CLN3-263ENST00000637871 USP32Q8NFA0 1604 aa24.61■■□□□ 1.53
CLN3-263ENST00000637871 RGPD8O14715 1765 aaPredicted RBP24.61■■□□□ 1.53
CLN3-263ENST00000637871 MST1RQ04912 1400 aa24.61■■□□□ 1.53
CLN3-263ENST00000637871 UBAP1LF5GYI3 381 aa24.6■■□□□ 1.53
CLN3-263ENST00000637871 WASLO00401 505 aaPredicted RBP24.6■■□□□ 1.53
CLN3-263ENST00000637871 CNGB1Q14028 1251 aaPredicted RBP24.6■■□□□ 1.53
CLN3-263ENST00000637871 CDK19Q9BWU1 502 aa24.59■■□□□ 1.53
CLN3-263ENST00000637871 CADPS2Q86UW7 1296 aa24.58■■□□□ 1.53
CLN3-263ENST00000637871 AMER1Q5JTC6 1135 aaPredicted RBP24.57■■□□□ 1.52
CLN3-263ENST00000637871 CC2D1BQ5T0F9 858 aaKnown RBP24.57■■□□□ 1.52
CLN3-263ENST00000637871 CABP2Q9NPB3 220 aa24.57■■□□□ 1.52
CLN3-263ENST00000637871 PRR36Q9H6K5 1346 aa24.57■■□□□ 1.52
CLN3-263ENST00000637871 PDE3BQ13370 1112 aa24.57■■□□□ 1.52
CLN3-263ENST00000637871 PIP4K2BP78356 416 aa24.56■■□□□ 1.52
CLN3-263ENST00000637871 NUDCQ9Y266 331 aa24.56■■□□□ 1.52
CLN3-263ENST00000637871 ATP7BP35670 1465 aa24.55■■□□□ 1.52
CLN3-263ENST00000637871 C1orf167Q5SNV9 1468 aa24.55■■□□□ 1.52
CLN3-263ENST00000637871 SRPK2P78362 688 aaKnown RBP24.55■■□□□ 1.52
CLN3-263ENST00000637871 EVC2Q86UK5 1308 aa24.55■■□□□ 1.52
CLN3-263ENST00000637871 SLAIN2Q9P270 581 aa24.53■■□□□ 1.52
CLN3-263ENST00000637871 MYOM1P52179 1685 aa24.53■■□□□ 1.52
CLN3-263ENST00000637871 ROBO1Q9Y6N7 1651 aa24.52■■□□□ 1.52
CLN3-263ENST00000637871 TOM1O60784 492 aa24.52■■□□□ 1.52
CLN3-263ENST00000637871 ORAI2Q96SN7 254 aa24.51■■□□□ 1.51
CLN3-263ENST00000637871 TOPAZ1Q8N9V7 1692 aa24.51■■□□□ 1.51
CLN3-263ENST00000637871 NUDT16Q96DE0 195 aaKnown RBP24.5■■□□□ 1.51
CLN3-263ENST00000637871 ANKARQ7Z5J8 1434 aa24.49■■□□□ 1.51
CLN3-263ENST00000637871 PPP2R1AP30153 589 aa24.48■■□□□ 1.51
CLN3-263ENST00000637871 ESCO1Q5FWF5 840 aa24.48■■□□□ 1.51
CLN3-263ENST00000637871 ITSN1Q15811 1721 aa24.48■■□□□ 1.51
CLN3-263ENST00000637871 BLMP54132 1417 aaPredicted RBP24.47■■□□□ 1.51
CLN3-263ENST00000637871 BRINP3Q76B58 766 aa24.46■■□□□ 1.51
CLN3-263ENST00000637871 DDX17Q92841 729 aaKnown RBP24.46■■□□□ 1.51
CLN3-263ENST00000637871 PMFBP1Q8TBY8 1022 aa24.45■■□□□ 1.5
CLN3-263ENST00000637871 NINLQ9Y2I6 1382 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms