RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 CLCN1P35523 988 aa8.96□□□□□ -0.98
SCN1A-211ENST00000635893 MMP16P51512 607 aa8.96□□□□□ -0.98
SCN1A-211ENST00000635893 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.96□□□□□ -0.98
SCN1A-211ENST00000635893 USB1Q9BQ65 265 aaKnown RBP8.96□□□□□ -0.98
SCN1A-211ENST00000635893 GPCPD1Q9NPB8 672 aa8.96□□□□□ -0.98
SCN1A-211ENST00000635893 TOR4AQ9NXH8 423 aa8.94□□□□□ -0.98
SCN1A-211ENST00000635893 HOXA2O43364 376 aa8.93□□□□□ -0.98
SCN1A-211ENST00000635893 DXOO77932 396 aaKnown RBP8.93□□□□□ -0.98
SCN1A-211ENST00000635893 CYP4X1Q8N118 509 aa8.93□□□□□ -0.98
SCN1A-211ENST00000635893 KRI1Q8N9T8 703 aaKnown RBP8.93□□□□□ -0.98
SCN1A-211ENST00000635893 FAM217BQ9NTX9 383 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-211ENST00000635893 HLA-CQ95604 372 aa8.91□□□□□ -0.98
SCN1A-211ENST00000635893 ZNF775Q96BV0 537 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-211ENST00000635893 AAASQ9NRG9 546 aa8.91□□□□□ -0.98
SCN1A-211ENST00000635893 ST8SIA5O15466 376 aa8.9□□□□□ -0.98
SCN1A-211ENST00000635893 AVPP01185 164 aa8.9□□□□□ -0.98
SCN1A-211ENST00000635893 TRIM32Q13049 653 aa8.9□□□□□ -0.98
SCN1A-211ENST00000635893 NUTM1Q86Y26 1132 aa8.9□□□□□ -0.98
SCN1A-211ENST00000635893 CRIPAKQ8N1N5 446 aa8.9□□□□□ -0.98
SCN1A-211ENST00000635893 WNT7AO00755 349 aa8.89□□□□□ -0.99
SCN1A-211ENST00000635893 TTC24A2A3L6 582 aaPredicted RBP8.88□□□□□ -0.99
SCN1A-211ENST00000635893 POTECB2RU33 542 aa8.88□□□□□ -0.99
SCN1A-211ENST00000635893 GUCA2AQ02747 115 aa8.87□□□□□ -0.99
SCN1A-211ENST00000635893 CTC1Q2NKJ3 1217 aa8.87□□□□□ -0.99
SCN1A-211ENST00000635893 CCDC24Q8N4L8 307 aa8.87□□□□□ -0.99
SCN1A-211ENST00000635893 BARGINQ6ZT62 677 aa8.86□□□□□ -0.99
SCN1A-211ENST00000635893 SNIP1Q8TAD8 396 aaKnown RBP8.86□□□□□ -0.99
SCN1A-211ENST00000635893 REPIN1Q9BWE0 567 aaKnown RBP8.86□□□□□ -0.99
SCN1A-211ENST00000635893 AXIN1O15169 862 aa8.85□□□□□ -0.99
SCN1A-211ENST00000635893 JUNDP17535 347 aa8.85□□□□□ -0.99
SCN1A-211ENST00000635893 SMCPP49901 116 aaPredicted RBP8.85□□□□□ -0.99
SCN1A-211ENST00000635893 ZMYND10O75800 440 aa8.84□□□□□ -0.99
SCN1A-211ENST00000635893 SSTR3P32745 418 aaPredicted RBP8.84□□□□□ -0.99
SCN1A-211ENST00000635893 RETREG3Q86VR2 466 aa8.84□□□□□ -0.99
SCN1A-211ENST00000635893 SYMPKQ92797 1274 aaKnown RBP8.84□□□□□ -0.99
SCN1A-211ENST00000635893 FDX1P10109 184 aa8.83□□□□□ -1
SCN1A-211ENST00000635893 MRGPRX2Q96LB1 330 aa8.83□□□□□ -1
SCN1A-211ENST00000635893 SMPD1P17405 629 aa8.82□□□□□ -1
SCN1A-211ENST00000635893 WNT7BP56706 349 aa8.82□□□□□ -1
SCN1A-211ENST00000635893 TTLL12Q14166 644 aaPredicted RBP8.82□□□□□ -1
SCN1A-211ENST00000635893 AMHR2Q16671 573 aa8.82□□□□□ -1
SCN1A-211ENST00000635893 DACH1Q9UI36 760 aa8.82□□□□□ -1
SCN1A-211ENST00000635893 RC3H1Q5TC82 1133 aaKnown RBP8.81□□□□□ -1
SCN1A-211ENST00000635893 ZC3H15Q8WU90 426 aaKnown RBP8.81□□□□□ -1
SCN1A-211ENST00000635893 SPIRE2Q8WWL2 714 aa8.81□□□□□ -1
SCN1A-211ENST00000635893 NUDT12Q9BQG2 462 aa8.81□□□□□ -1
SCN1A-211ENST00000635893 PCDHGC3Q9UN70 934 aa8.81□□□□□ -1
SCN1A-211ENST00000635893 C6orf229H3BNL8 230 aa8.8□□□□□ -1
SCN1A-211ENST00000635893 SKOR1P84550 965 aa8.8□□□□□ -1
SCN1A-211ENST00000635893 J3QL48 77 aa8.78□□□□□ -1
SCN1A-211ENST00000635893 GIGYF2Q6Y7W6 1299 aaKnown RBP8.78□□□□□ -1
SCN1A-211ENST00000635893 GMPR2Q9P2T1 348 aaKnown RBP8.78□□□□□ -1
SCN1A-211ENST00000635893 MOXD2PA6NHM9 499 aa8.77□□□□□ -1.01
SCN1A-211ENST00000635893 MS4A1P11836 297 aa8.77□□□□□ -1.01
SCN1A-211ENST00000635893 NDUFV2P19404 249 aa8.77□□□□□ -1.01
SCN1A-211ENST00000635893 C11orf95C9JLR9 678 aaPredicted RBP8.76□□□□□ -1.01
SCN1A-211ENST00000635893 PTCRAQ6ISU1 281 aaPredicted RBP8.76□□□□□ -1.01
SCN1A-211ENST00000635893 CCNYL3P0C7X3 344 aa8.75□□□□□ -1.01
SCN1A-211ENST00000635893 PTPRNQ16849 979 aa8.75□□□□□ -1.01
SCN1A-211ENST00000635893 BEGAINQ9BUH8 593 aa8.75□□□□□ -1.01
SCN1A-211ENST00000635893 SPDYE5A6NIY4 337 aa8.74□□□□□ -1.01
SCN1A-211ENST00000635893 TREML4Q6UXN2 200 aa8.74□□□□□ -1.01
SCN1A-211ENST00000635893 HPS1Q92902 700 aa8.74□□□□□ -1.01
SCN1A-211ENST00000635893 ATP13A2Q9NQ11 1180 aa8.74□□□□□ -1.01
SCN1A-211ENST00000635893 GJA5P36382 358 aa8.73□□□□□ -1.01
SCN1A-211ENST00000635893 MTMR2Q13614 643 aa8.73□□□□□ -1.01
SCN1A-211ENST00000635893 DIXDC1Q155Q3 683 aa8.73□□□□□ -1.01
SCN1A-211ENST00000635893 PRR7Q8TB68 274 aa8.73□□□□□ -1.01
SCN1A-211ENST00000635893 EVA1BQ9NVM1 165 aa8.73□□□□□ -1.01
SCN1A-211ENST00000635893 ALDH1A1P00352 501 aa8.72□□□□□ -1.01
SCN1A-211ENST00000635893 DESI1Q6ICB0 168 aa8.72□□□□□ -1.01
SCN1A-211ENST00000635893 EHBP1Q8NDI1 1231 aa8.72□□□□□ -1.01
SCN1A-211ENST00000635893 TRIM66O15016 1216 aa8.71□□□□□ -1.02
SCN1A-211ENST00000635893 SIAH2O43255 324 aa8.71□□□□□ -1.02
SCN1A-211ENST00000635893 PARP9Q8IXQ6 854 aa8.71□□□□□ -1.02
SCN1A-211ENST00000635893 AK7Q96M32 723 aa8.71□□□□□ -1.02
SCN1A-211ENST00000635893 TBC1D2Q9BYX2 928 aa8.71□□□□□ -1.02
SCN1A-211ENST00000635893 SENP2Q9HC62 589 aa8.71□□□□□ -1.02
SCN1A-211ENST00000635893 SH3BP2P78314 561 aa8.7□□□□□ -1.02
SCN1A-211ENST00000635893 KCNH2Q12809 1159 aa8.7□□□□□ -1.02
SCN1A-211ENST00000635893 LCE2AQ5TA79 106 aaPredicted RBP8.7□□□□□ -1.02
SCN1A-211ENST00000635893 UNC93B1Q9H1C4 597 aa8.7□□□□□ -1.02
SCN1A-211ENST00000635893 RSBN1LQ6PCB5 846 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-211ENST00000635893 TRIM47Q96LD4 638 aa8.68□□□□□ -1.02
SCN1A-211ENST00000635893 SPTLC1O15269 473 aa8.67□□□□□ -1.02
SCN1A-211ENST00000635893 BAP1Q92560 729 aa8.67□□□□□ -1.02
SCN1A-211ENST00000635893 KIFC2Q96AC6 838 aa8.67□□□□□ -1.02
SCN1A-211ENST00000635893 WASF2Q9Y6W5 498 aa8.67□□□□□ -1.02
SCN1A-211ENST00000635893 WFS1O76024 890 aa8.66□□□□□ -1.02
SCN1A-211ENST00000635893 SNRPBP14678 240 aaKnown RBP8.66□□□□□ -1.02
SCN1A-211ENST00000635893 LINC01559Q495D7 138 aa8.66□□□□□ -1.02
SCN1A-211ENST00000635893 PCDHB15Q9Y5E8 787 aa8.66□□□□□ -1.02
SCN1A-211ENST00000635893 LYPD8Q6UX82 237 aa8.65□□□□□ -1.02
SCN1A-211ENST00000635893 ZNF511Q8NB15 262 aa8.65□□□□□ -1.02
SCN1A-211ENST00000635893 ZBTB3Q9H5J0 574 aa8.65□□□□□ -1.02
SCN1A-211ENST00000635893 HRCP23327 699 aa8.64□□□□□ -1.03
SCN1A-211ENST00000635893 VARSP26640 1264 aaKnown RBP8.64□□□□□ -1.03
SCN1A-211ENST00000635893 PRPF38BQ5VTL8 546 aaKnown RBP8.64□□□□□ -1.03
SCN1A-211ENST00000635893 RIC3Q7Z5B4 369 aa8.64□□□□□ -1.03
SCN1A-211ENST00000635893 CFAP99D6REC4 459 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms