RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 PTCH1Q13635 1447 aa20.25■□□□□ 0.83
LINC00339-208ENST00000634934 PLEKHH1Q9ULM0 1364 aa20.25■□□□□ 0.83
LINC00339-208ENST00000634934 KNDC1Q76NI1 1749 aa20.24■□□□□ 0.83
LINC00339-208ENST00000634934 FAM135BQ49AJ0 1406 aa20.24■□□□□ 0.83
LINC00339-208ENST00000634934 ARHGEF28Q8N1W1 1705 aaKnown RBP20.24■□□□□ 0.83
LINC00339-208ENST00000634934 NALCNQ8IZF0 1738 aa20.23■□□□□ 0.83
LINC00339-208ENST00000634934 C14orf37Q86TY3 774 aa20.22■□□□□ 0.83
LINC00339-208ENST00000634934 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.21■□□□□ 0.83
LINC00339-208ENST00000634934 MINK1Q8N4C8 1332 aaPredicted RBP20.21■□□□□ 0.83
LINC00339-208ENST00000634934 PIP4K2BP78356 416 aa20.2■□□□□ 0.82
LINC00339-208ENST00000634934 MSH6P52701 1360 aa20.2■□□□□ 0.82
LINC00339-208ENST00000634934 TESK2Q96S53 571 aa20.19■□□□□ 0.82
LINC00339-208ENST00000634934 TOM1O60784 492 aa20.18■□□□□ 0.82
LINC00339-208ENST00000634934 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
LINC00339-208ENST00000634934 NCOA3Q9Y6Q9 1424 aa20.18■□□□□ 0.82
LINC00339-208ENST00000634934 QRICH2Q9H0J4 1663 aa20.17■□□□□ 0.82
LINC00339-208ENST00000634934 ADGRL3Q9HAR2 1447 aa20.15■□□□□ 0.82
LINC00339-208ENST00000634934 TMF1P82094 1093 aa20.15■□□□□ 0.82
LINC00339-208ENST00000634934 SBNO2Q9Y2G9 1366 aa20.14■□□□□ 0.81
LINC00339-208ENST00000634934 SLC24A1O60721 1099 aa20.14■□□□□ 0.81
LINC00339-208ENST00000634934 C19orf44Q9H6X5 657 aa20.14■□□□□ 0.81
LINC00339-208ENST00000634934 EVC2Q86UK5 1308 aa20.12■□□□□ 0.81
LINC00339-208ENST00000634934 ZNF316A6NFI3 1004 aaPredicted RBP20.12■□□□□ 0.81
LINC00339-208ENST00000634934 POLR3GLQ9BT43 218 aa20.12■□□□□ 0.81
LINC00339-208ENST00000634934 DISP3Q9P2K9 1392 aa20.11■□□□□ 0.81
LINC00339-208ENST00000634934 ROBO1Q9Y6N7 1651 aa20.1■□□□□ 0.81
LINC00339-208ENST00000634934 C11orf95C9JLR9 678 aaPredicted RBP20.1■□□□□ 0.81
LINC00339-208ENST00000634934 WASLO00401 505 aaPredicted RBP20.1■□□□□ 0.81
LINC00339-208ENST00000634934 ATF3P18847 181 aa20.1■□□□□ 0.81
LINC00339-208ENST00000634934 SRPK2P78362 688 aaKnown RBP20.1■□□□□ 0.81
LINC00339-208ENST00000634934 DIEXFQ68CQ4 756 aaKnown RBP20.1■□□□□ 0.81
LINC00339-208ENST00000634934 CDK19Q9BWU1 502 aa20.1■□□□□ 0.81
LINC00339-208ENST00000634934 SLAIN2Q9P270 581 aa20.09■□□□□ 0.81
LINC00339-208ENST00000634934 DCCP43146 1447 aa20.09■□□□□ 0.81
LINC00339-208ENST00000634934 CADPS2Q86UW7 1296 aa20.08■□□□□ 0.81
LINC00339-208ENST00000634934 CABP2Q9NPB3 220 aa20.08■□□□□ 0.81
LINC00339-208ENST00000634934 TULP4Q9NRJ4 1543 aa20.08■□□□□ 0.8
LINC00339-208ENST00000634934 CDCA8Q53HL2 280 aa20.07■□□□□ 0.8
LINC00339-208ENST00000634934 NUTM2FA1L443 756 aa20.07■□□□□ 0.8
LINC00339-208ENST00000634934 MST1RQ04912 1400 aa20.06■□□□□ 0.8
LINC00339-208ENST00000634934 CDC42BPGQ6DT37 1551 aa20.06■□□□□ 0.8
LINC00339-208ENST00000634934 KIF7Q2M1P5 1343 aa20.06■□□□□ 0.8
LINC00339-208ENST00000634934 ADGRB2O60241 1585 aa20.05■□□□□ 0.8
LINC00339-208ENST00000634934 WASHC2AQ641Q2 1341 aa20.04■□□□□ 0.8
LINC00339-208ENST00000634934 CCDC7Q96M83 1385 aa20.03■□□□□ 0.8
LINC00339-208ENST00000634934 HSPA1LP34931 641 aa20.03■□□□□ 0.8
LINC00339-208ENST00000634934 FMN2Q9NZ56 1722 aa20.02■□□□□ 0.8
LINC00339-208ENST00000634934 NUDT16Q96DE0 195 aaKnown RBP20.02■□□□□ 0.79
LINC00339-208ENST00000634934 PELP1Q8IZL8 1130 aaKnown RBP20.01■□□□□ 0.79
LINC00339-208ENST00000634934 PUS7Q96PZ0 661 aaKnown RBP20.01■□□□□ 0.79
LINC00339-208ENST00000634934 TMC1Q8TDI8 760 aa20■□□□□ 0.79
LINC00339-208ENST00000634934 C1orf167Q5SNV9 1468 aa20■□□□□ 0.79
LINC00339-208ENST00000634934 ATAD2Q6PL18 1390 aa19.99■□□□□ 0.79
LINC00339-208ENST00000634934 RGPD8O14715 1765 aaPredicted RBP19.99■□□□□ 0.79
LINC00339-208ENST00000634934 PRR36Q9H6K5 1346 aa19.99■□□□□ 0.79
LINC00339-208ENST00000634934 BRINP3Q76B58 766 aa19.98■□□□□ 0.79
LINC00339-208ENST00000634934 PHLPP1O60346 1717 aa19.97■□□□□ 0.79
LINC00339-208ENST00000634934 CENPBP07199 599 aaPredicted RBP19.97■□□□□ 0.79
LINC00339-208ENST00000634934 ORAI2Q96SN7 254 aa19.97■□□□□ 0.79
LINC00339-208ENST00000634934 CCDC61Q9Y6R9 512 aa19.97■□□□□ 0.79
LINC00339-208ENST00000634934 USP32Q8NFA0 1604 aa19.96■□□□□ 0.79
LINC00339-208ENST00000634934 ANKARQ7Z5J8 1434 aa19.96■□□□□ 0.79
LINC00339-208ENST00000634934 CABP1Q9NZU7 370 aa19.96■□□□□ 0.79
LINC00339-208ENST00000634934 ATP7BP35670 1465 aa19.95■□□□□ 0.78
LINC00339-208ENST00000634934 DDX17Q92841 729 aaKnown RBP19.95■□□□□ 0.78
LINC00339-208ENST00000634934 SLC12A5Q9H2X9 1139 aa19.95■□□□□ 0.78
LINC00339-208ENST00000634934 ESCO1Q5FWF5 840 aa19.94■□□□□ 0.78
LINC00339-208ENST00000634934 PPIP5K1Q6PFW1 1433 aa19.94■□□□□ 0.78
LINC00339-208ENST00000634934 NHSL1Q5SYE7 1610 aa19.94■□□□□ 0.78
LINC00339-208ENST00000634934 DDX10Q13206 875 aaKnown RBP19.92■□□□□ 0.78
LINC00339-208ENST00000634934 PMFBP1Q8TBY8 1022 aa19.92■□□□□ 0.78
LINC00339-208ENST00000634934 COL16A1Q07092 1604 aaPredicted RBP19.92■□□□□ 0.78
LINC00339-208ENST00000634934 AHDC1Q5TGY3 1603 aaPredicted RBP19.92■□□□□ 0.78
LINC00339-208ENST00000634934 PHF8Q9UPP1 1060 aa19.91■□□□□ 0.78
LINC00339-208ENST00000634934 NINLQ9Y2I6 1382 aa19.9■□□□□ 0.78
LINC00339-208ENST00000634934 PLEKHG3A1L390 1219 aa19.89■□□□□ 0.77
LINC00339-208ENST00000634934 NGDNQ8NEJ9 315 aaKnown RBP19.89■□□□□ 0.77
LINC00339-208ENST00000634934 PANK3Q9H999 370 aa19.88■□□□□ 0.77
LINC00339-208ENST00000634934 TERF2IPQ9NYB0 399 aa19.88■□□□□ 0.77
LINC00339-208ENST00000634934 HDGFL2Q7Z4V5 671 aaPredicted RBP19.87■□□□□ 0.77
LINC00339-208ENST00000634934 MYOM1P52179 1685 aa19.87■□□□□ 0.77
LINC00339-208ENST00000634934 TOPAZ1Q8N9V7 1692 aa19.87■□□□□ 0.77
LINC00339-208ENST00000634934 ACEP12821 1306 aa19.86■□□□□ 0.77
LINC00339-208ENST00000634934 KIF1AQ12756 1690 aa19.86■□□□□ 0.77
LINC00339-208ENST00000634934 ITSN1Q15811 1721 aa19.86■□□□□ 0.77
LINC00339-208ENST00000634934 ANKRD36BQ8N2N9 1353 aa19.85■□□□□ 0.77
LINC00339-208ENST00000634934 FOXO3O43524 673 aa19.84■□□□□ 0.77
LINC00339-208ENST00000634934 XPCQ01831 940 aaPredicted RBP19.84■□□□□ 0.77
LINC00339-208ENST00000634934 A0A1W2PP64 1363 aa19.84■□□□□ 0.77
LINC00339-208ENST00000634934 CD163L1Q9NR16 1453 aa19.82■□□□□ 0.76
LINC00339-208ENST00000634934 KTN1Q86UP2 1357 aaKnown RBP19.82■□□□□ 0.76
LINC00339-208ENST00000634934 PSME1Q06323 249 aa19.82■□□□□ 0.76
LINC00339-208ENST00000634934 ZNF692Q9BU19 519 aaPredicted RBP19.82■□□□□ 0.76
LINC00339-208ENST00000634934 PXDNQ92626 1479 aa19.82■□□□□ 0.76
LINC00339-208ENST00000634934 POLR3AO14802 1390 aaPredicted RBP19.82■□□□□ 0.76
LINC00339-208ENST00000634934 CPSF1Q10570 1443 aaKnown RBP19.81■□□□□ 0.76
LINC00339-208ENST00000634934 CARD14Q9BXL6 1004 aa19.81■□□□□ 0.76
LINC00339-208ENST00000634934 SOS2Q07890 1332 aaPredicted RBP19.79■□□□□ 0.76
LINC00339-208ENST00000634934 KNSTRNQ9Y448 316 aa19.79■□□□□ 0.76
LINC00339-208ENST00000634934 SHPRHQ149N8 1683 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms