RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CAMSAP1Q5T5Y3 1602 aa16.62■□□□□ 0.25
LINC00540-203ENST00000631321 ARHGAP31Q2M1Z3 1444 aa16.62■□□□□ 0.25
LINC00540-203ENST00000631321 IQSEC2Q5JU85 1478 aa16.61■□□□□ 0.25
LINC00540-203ENST00000631321 PHF23Q9BUL5 403 aaPredicted RBP16.61■□□□□ 0.25
LINC00540-203ENST00000631321 BCAR3O75815 825 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 GLI2P10070 1586 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 PDE3AQ14432 1141 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 TMEM132EQ6IEE7 984 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 OSCARQ8IYS5 282 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 DDRGK1Q96HY6 314 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 NEXMIFQ5QGS0 1516 aa16.6■□□□□ 0.25
LINC00540-203ENST00000631321 NCBP3Q53F19 620 aaKnown RBP16.59■□□□□ 0.25
LINC00540-203ENST00000631321 RUNDC1Q96C34 613 aa16.59■□□□□ 0.25
LINC00540-203ENST00000631321 NSD2O96028 1365 aa16.59■□□□□ 0.25
LINC00540-203ENST00000631321 SIGLEC1Q9BZZ2 1709 aa16.59■□□□□ 0.25
LINC00540-203ENST00000631321 CGNL1Q0VF96 1302 aa16.59■□□□□ 0.25
LINC00540-203ENST00000631321 VGFO15240 615 aaPredicted RBP16.58■□□□□ 0.25
LINC00540-203ENST00000631321 ZFYVE9O95405 1425 aa16.58■□□□□ 0.25
LINC00540-203ENST00000631321 FAM161AQ3B820 660 aa16.58■□□□□ 0.24
LINC00540-203ENST00000631321 TULP4Q9NRJ4 1543 aa16.58■□□□□ 0.24
LINC00540-203ENST00000631321 ANKRD36BQ8N2N9 1353 aa16.58■□□□□ 0.24
LINC00540-203ENST00000631321 EVC2Q86UK5 1308 aa16.57■□□□□ 0.24
LINC00540-203ENST00000631321 DIP2CQ9Y2E4 1556 aa16.57■□□□□ 0.24
LINC00540-203ENST00000631321 C8orf34Q49A92 452 aa16.56■□□□□ 0.24
LINC00540-203ENST00000631321 RTL5Q5HYW3 569 aaPredicted RBP16.56■□□□□ 0.24
LINC00540-203ENST00000631321 ARHGEF28Q8N1W1 1705 aaKnown RBP16.56■□□□□ 0.24
LINC00540-203ENST00000631321 CCDC27Q2M243 656 aa16.56■□□□□ 0.24
LINC00540-203ENST00000631321 WDR63Q8IWG1 891 aa16.56■□□□□ 0.24
LINC00540-203ENST00000631321 USP35Q9P2H5 1018 aa16.54■□□□□ 0.24
LINC00540-203ENST00000631321 CFAP65Q6ZU64 1925 aaKnown RBP16.54■□□□□ 0.24
LINC00540-203ENST00000631321 MTHFSP49914 203 aa16.54■□□□□ 0.24
LINC00540-203ENST00000631321 TCP11L2Q8N4U5 519 aa16.54■□□□□ 0.24
LINC00540-203ENST00000631321 CFAP53Q96M91 514 aa16.54■□□□□ 0.24
LINC00540-203ENST00000631321 RAPGEF3O95398 923 aa16.53■□□□□ 0.24
LINC00540-203ENST00000631321 PPM1GO15355 546 aaPredicted RBP16.53■□□□□ 0.24
LINC00540-203ENST00000631321 TNNT2P45379 298 aaPredicted RBP16.52■□□□□ 0.24
LINC00540-203ENST00000631321 AAMPQ13685 434 aa16.52■□□□□ 0.24
LINC00540-203ENST00000631321 SLC52A1Q9NWF4 448 aa16.52■□□□□ 0.24
LINC00540-203ENST00000631321 RARSP54136 660 aaKnown RBP16.51■□□□□ 0.23
LINC00540-203ENST00000631321 IDI1Q13907 227 aa16.5■□□□□ 0.23
LINC00540-203ENST00000631321 CLUAP1Q96AJ1 413 aa16.5■□□□□ 0.23
LINC00540-203ENST00000631321 IGHDP01880 384 aa16.5■□□□□ 0.23
LINC00540-203ENST00000631321 RICTORQ6R327 1708 aa16.49■□□□□ 0.23
LINC00540-203ENST00000631321 ABCC11Q96J66 1382 aa16.49■□□□□ 0.23
LINC00540-203ENST00000631321 ADGRB2O60241 1585 aa16.48■□□□□ 0.23
LINC00540-203ENST00000631321 RRP7AQ9Y3A4 280 aaKnown RBP16.48■□□□□ 0.23
LINC00540-203ENST00000631321 PANK1Q8TE04 598 aa16.48■□□□□ 0.23
LINC00540-203ENST00000631321 NUTM2DQ5VT03 806 aaPredicted RBP16.47■□□□□ 0.23
LINC00540-203ENST00000631321 CABP2Q9NPB3 220 aa16.47■□□□□ 0.23
LINC00540-203ENST00000631321 LAS1LQ9Y4W2 734 aaKnown RBP16.47■□□□□ 0.23
LINC00540-203ENST00000631321 RGS3P49796 1198 aa16.47■□□□□ 0.23
LINC00540-203ENST00000631321 COG6Q9Y2V7 657 aa16.47■□□□□ 0.23
LINC00540-203ENST00000631321 CANXP27824 592 aaKnown RBP16.46■□□□□ 0.23
LINC00540-203ENST00000631321 NEUROD2Q15784 382 aa16.46■□□□□ 0.23
LINC00540-203ENST00000631321 A0A1W2PP64 1363 aa16.46■□□□□ 0.23
LINC00540-203ENST00000631321 MAPK8IP3Q9UPT6 1336 aa16.46■□□□□ 0.23
LINC00540-203ENST00000631321 PTPRMP28827 1452 aa16.46■□□□□ 0.23
LINC00540-203ENST00000631321 YEATS2Q9ULM3 1422 aa16.46■□□□□ 0.22
LINC00540-203ENST00000631321 MED14O60244 1454 aa16.45■□□□□ 0.22
LINC00540-203ENST00000631321 TMEM131LA2VDJ0 1609 aa16.45■□□□□ 0.22
LINC00540-203ENST00000631321 NEFMP07197 916 aa16.45■□□□□ 0.22
LINC00540-203ENST00000631321 MYH16Q9H6N6 1097 aa16.45■□□□□ 0.22
LINC00540-203ENST00000631321 ATAD2Q6PL18 1390 aa16.45■□□□□ 0.22
LINC00540-203ENST00000631321 COL3A1P02461 1466 aaPredicted RBP16.44■□□□□ 0.22
LINC00540-203ENST00000631321 CT47B1P0C2W7 299 aaPredicted RBP16.44■□□□□ 0.22
LINC00540-203ENST00000631321 ZMYM3Q14202 1370 aa16.43■□□□□ 0.22
LINC00540-203ENST00000631321 U2AF1L5P0DN76 240 aaPredicted RBP16.43■□□□□ 0.22
LINC00540-203ENST00000631321 U2AF1Q01081 240 aaKnown RBP eCLIP16.43■□□□□ 0.22
LINC00540-203ENST00000631321 PREX1Q8TCU6 1659 aa16.43■□□□□ 0.22
LINC00540-203ENST00000631321 PMFBP1Q8TBY8 1022 aa16.43■□□□□ 0.22
LINC00540-203ENST00000631321 CLTCQ00610 1675 aaKnown RBP16.42■□□□□ 0.22
LINC00540-203ENST00000631321 NLRP1Q9C000 1473 aa16.42■□□□□ 0.22
LINC00540-203ENST00000631321 FRAT1Q92837 279 aaPredicted RBP16.42■□□□□ 0.22
LINC00540-203ENST00000631321 PLEKHF1Q96S99 279 aa16.41■□□□□ 0.22
LINC00540-203ENST00000631321 YTHDC2Q9H6S0 1430 aaKnown RBP16.41■□□□□ 0.22
LINC00540-203ENST00000631321 CD163L1Q9NR16 1453 aa16.41■□□□□ 0.22
LINC00540-203ENST00000631321 RLBP1P12271 317 aa16.41■□□□□ 0.22
LINC00540-203ENST00000631321 SRPK2P78362 688 aaKnown RBP16.39■□□□□ 0.21
LINC00540-203ENST00000631321 TERF2IPQ9NYB0 399 aa16.39■□□□□ 0.21
LINC00540-203ENST00000631321 USP19O94966 1318 aa16.39■□□□□ 0.21
LINC00540-203ENST00000631321 VIRMAQ69YN4 1812 aaKnown RBP16.39■□□□□ 0.21
LINC00540-203ENST00000631321 SAFB2Q14151 953 aaKnown RBP eCLIP16.39■□□□□ 0.21
LINC00540-203ENST00000631321 STK26Q9P289 416 aa16.39■□□□□ 0.21
LINC00540-203ENST00000631321 PCDHB15Q9Y5E8 787 aa16.39■□□□□ 0.21
LINC00540-203ENST00000631321 DAXXQ9UER7 740 aaPredicted RBP16.38■□□□□ 0.21
LINC00540-203ENST00000631321 ANKRD26Q9UPS8 1709 aa16.38■□□□□ 0.21
LINC00540-203ENST00000631321 FYB1O15117 783 aa16.38■□□□□ 0.21
LINC00540-203ENST00000631321 PRAM1Q96QH2 718 aa16.38■□□□□ 0.21
LINC00540-203ENST00000631321 IL16Q14005 1332 aa16.38■□□□□ 0.21
LINC00540-203ENST00000631321 MYO5BQ9ULV0 1848 aa16.38■□□□□ 0.21
LINC00540-203ENST00000631321 TNNQ9UQP3 1299 aa16.37■□□□□ 0.21
LINC00540-203ENST00000631321 PNPLA6Q8IY17 1366 aa16.37■□□□□ 0.21
LINC00540-203ENST00000631321 ARHGEF40Q8TER5 1519 aa16.37■□□□□ 0.21
LINC00540-203ENST00000631321 GGNBP2Q9H3C7 697 aa16.37■□□□□ 0.21
LINC00540-203ENST00000631321 TMPOP42166 694 aaKnown RBP16.36■□□□□ 0.21
LINC00540-203ENST00000631321 SLC4A3P48751 1232 aa16.36■□□□□ 0.21
LINC00540-203ENST00000631321 ALKQ9UM73 1620 aa16.36■□□□□ 0.21
LINC00540-203ENST00000631321 MVPQ14764 893 aaKnown RBP16.36■□□□□ 0.21
LINC00540-203ENST00000631321 TRIM35Q9UPQ4 493 aa16.36■□□□□ 0.21
LINC00540-203ENST00000631321 MINK1Q8N4C8 1332 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms