RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 NRXN3Q9Y4C0 1643 aa26.24■■□□□ 1.79
CHRNA4-209ENST00000627000 TRHP20396 242 aaPredicted RBP26.24■■□□□ 1.79
CHRNA4-209ENST00000627000 WDR43Q15061 677 aaKnown RBP eCLIP26.24■■□□□ 1.79
CHRNA4-209ENST00000627000 SRPK2P78362 688 aaKnown RBP26.23■■□□□ 1.79
CHRNA4-209ENST00000627000 ANKRD36BQ8N2N9 1353 aa26.22■■□□□ 1.79
CHRNA4-209ENST00000627000 USP32Q8NFA0 1604 aa26.21■■□□□ 1.79
CHRNA4-209ENST00000627000 UBR1Q8IWV7 1749 aa26.21■■□□□ 1.79
CHRNA4-209ENST00000627000 CEBPAP49715 358 aaPredicted RBP26.2■■□□□ 1.79
CHRNA4-209ENST00000627000 MORC1Q86VD1 984 aa26.19■■□□□ 1.78
CHRNA4-209ENST00000627000 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.19■■□□□ 1.78
CHRNA4-209ENST00000627000 WAPLQ7Z5K2 1190 aa26.18■■□□□ 1.78
CHRNA4-209ENST00000627000 CDCA7LQ96GN5 454 aa26.18■■□□□ 1.78
CHRNA4-209ENST00000627000 TNNT2P45379 298 aaPredicted RBP26.17■■□□□ 1.78
CHRNA4-209ENST00000627000 CGNL1Q0VF96 1302 aa26.17■■□□□ 1.78
CHRNA4-209ENST00000627000 PLEKHH1Q9ULM0 1364 aa26.17■■□□□ 1.78
CHRNA4-209ENST00000627000 DLC1Q96QB1 1528 aa26.17■■□□□ 1.78
CHRNA4-209ENST00000627000 METP08581 1390 aa26.16■■□□□ 1.78
CHRNA4-209ENST00000627000 A0A1W2PP64 1363 aa26.16■■□□□ 1.78
CHRNA4-209ENST00000627000 RNF123Q5XPI4 1314 aa26.16■■□□□ 1.78
CHRNA4-209ENST00000627000 PDE3BQ13370 1112 aa26.16■■□□□ 1.78
CHRNA4-209ENST00000627000 ERICH6BQ5W0A0 696 aa26.15■■□□□ 1.78
CHRNA4-209ENST00000627000 CDK19Q9BWU1 502 aa26.14■■□□□ 1.78
CHRNA4-209ENST00000627000 ATAD2Q6PL18 1390 aa26.14■■□□□ 1.78
CHRNA4-209ENST00000627000 TMEM2Q9UHN6 1383 aa26.14■■□□□ 1.78
CHRNA4-209ENST00000627000 ABCC11Q96J66 1382 aa26.13■■□□□ 1.77
CHRNA4-209ENST00000627000 NINLQ9Y2I6 1382 aa26.12■■□□□ 1.77
CHRNA4-209ENST00000627000 C3P01024 1663 aa26.12■■□□□ 1.77
CHRNA4-209ENST00000627000 PLPPR3Q6T4P5 718 aa26.12■■□□□ 1.77
CHRNA4-209ENST00000627000 CCDC146Q8IYE0 955 aa26.11■■□□□ 1.77
CHRNA4-209ENST00000627000 POLR3AO14802 1390 aaPredicted RBP26.11■■□□□ 1.77
CHRNA4-209ENST00000627000 HDGFP51858 240 aaKnown RBP26.1■■□□□ 1.77
CHRNA4-209ENST00000627000 CD163L1Q9NR16 1453 aa26.1■■□□□ 1.77
CHRNA4-209ENST00000627000 FER1L4A9Z1Z3 1794 aa26.1■■□□□ 1.77
CHRNA4-209ENST00000627000 PPP4R2Q9NY27 417 aa26.09■■□□□ 1.77
CHRNA4-209ENST00000627000 TXNDC2Q86VQ3 553 aa26.07■■□□□ 1.76
CHRNA4-209ENST00000627000 NLRP1Q9C000 1473 aa26.07■■□□□ 1.76
CHRNA4-209ENST00000627000 NSD2O96028 1365 aa26.06■■□□□ 1.76
CHRNA4-209ENST00000627000 SHPRHQ149N8 1683 aa26.06■■□□□ 1.76
CHRNA4-209ENST00000627000 LTKP29376 864 aa26.05■■□□□ 1.76
CHRNA4-209ENST00000627000 TERF2IPQ9NYB0 399 aa26.05■■□□□ 1.76
CHRNA4-209ENST00000627000 CABP1Q9NZU7 370 aa26.05■■□□□ 1.76
CHRNA4-209ENST00000627000 RCAN3Q9UKA8 241 aa26.05■■□□□ 1.76
CHRNA4-209ENST00000627000 MTHFSP49914 203 aa26.04■■□□□ 1.76
CHRNA4-209ENST00000627000 KNDC1Q76NI1 1749 aa26.04■■□□□ 1.76
CHRNA4-209ENST00000627000 GGNBP2Q9H3C7 697 aa26.03■■□□□ 1.76
CHRNA4-209ENST00000627000 ADAMTS13Q76LX8 1427 aa26.03■■□□□ 1.76
CHRNA4-209ENST00000627000 TSHZ2Q9NRE2 1034 aa26.02■■□□□ 1.76
CHRNA4-209ENST00000627000 ZNF521Q96K83 1311 aa26.02■■□□□ 1.76
CHRNA4-209ENST00000627000 APAF1O14727 1248 aa26.02■■□□□ 1.76
CHRNA4-209ENST00000627000 B4GALNT3Q6L9W6 998 aa26■■□□□ 1.75
CHRNA4-209ENST00000627000 TECPR2O15040 1411 aa25.99■■□□□ 1.75
CHRNA4-209ENST00000627000 HDGFL2Q7Z4V5 671 aaPredicted RBP25.99■■□□□ 1.75
CHRNA4-209ENST00000627000 FYB1O15117 783 aa25.99■■□□□ 1.75
CHRNA4-209ENST00000627000 CPS1P31327 1500 aa25.99■■□□□ 1.75
CHRNA4-209ENST00000627000 RRP1P56182 461 aaKnown RBP25.98■■□□□ 1.75
CHRNA4-209ENST00000627000 PLEKHG1Q9ULL1 1385 aa25.98■■□□□ 1.75
CHRNA4-209ENST00000627000 ANKRD26Q9UPS8 1709 aa25.98■■□□□ 1.75
CHRNA4-209ENST00000627000 WASLO00401 505 aaPredicted RBP25.97■■□□□ 1.75
CHRNA4-209ENST00000627000 FAM135BQ49AJ0 1406 aa25.97■■□□□ 1.75
CHRNA4-209ENST00000627000 SIRT1Q96EB6 747 aa25.95■■□□□ 1.74
CHRNA4-209ENST00000627000 ROBO2Q9HCK4 1378 aa25.95■■□□□ 1.74
CHRNA4-209ENST00000627000 GOLGA2Q08379 1002 aa25.94■■□□□ 1.74
CHRNA4-209ENST00000627000 CFAP53Q96M91 514 aa25.94■■□□□ 1.74
CHRNA4-209ENST00000627000 KIF20BQ96Q89 1820 aa25.93■■□□□ 1.74
CHRNA4-209ENST00000627000 ATP7BP35670 1465 aa25.93■■□□□ 1.74
CHRNA4-209ENST00000627000 DUSP27Q5VZP5 1158 aa25.93■■□□□ 1.74
CHRNA4-209ENST00000627000 SLC26A8Q96RN1 970 aa25.93■■□□□ 1.74
CHRNA4-209ENST00000627000 SLIT1O75093 1534 aa25.92■■□□□ 1.74
CHRNA4-209ENST00000627000 MED14O60244 1454 aa25.92■■□□□ 1.74
CHRNA4-209ENST00000627000 ARHGAP23Q9P227 1491 aa25.92■■□□□ 1.74
CHRNA4-209ENST00000627000 EID1Q9Y6B2 187 aa25.92■■□□□ 1.74
CHRNA4-209ENST00000627000 NCKAP5LQ9HCH0 1330 aa25.91■■□□□ 1.74
CHRNA4-209ENST00000627000 PPIP5K1Q6PFW1 1433 aa25.91■■□□□ 1.74
CHRNA4-209ENST00000627000 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.9■■□□□ 1.74
CHRNA4-209ENST00000627000 SLFN5Q08AF3 891 aa25.89■■□□□ 1.74
CHRNA4-209ENST00000627000 SPINK5Q9NQ38 1064 aaPredicted RBP25.89■■□□□ 1.74
CHRNA4-209ENST00000627000 NUDT16Q96DE0 195 aaKnown RBP25.89■■□□□ 1.73
CHRNA4-209ENST00000627000 PTPRUQ92729 1446 aa25.88■■□□□ 1.73
CHRNA4-209ENST00000627000 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.88■■□□□ 1.73
CHRNA4-209ENST00000627000 DMRT2Q9Y5R5 561 aa25.87■■□□□ 1.73
CHRNA4-209ENST00000627000 RUNDC1Q96C34 613 aa25.86■■□□□ 1.73
CHRNA4-209ENST00000627000 CPSF1Q10570 1443 aaKnown RBP25.86■■□□□ 1.73
CHRNA4-209ENST00000627000 PLIN1O60240 522 aa25.85■■□□□ 1.73
CHRNA4-209ENST00000627000 THEMISQ8N1K5 641 aaPredicted RBP25.85■■□□□ 1.73
CHRNA4-209ENST00000627000 RIMS1Q86UR5 1692 aaKnown RBP25.85■■□□□ 1.73
CHRNA4-209ENST00000627000 PRR36Q9H6K5 1346 aa25.85■■□□□ 1.73
CHRNA4-209ENST00000627000 TRMT2AQ8IZ69 625 aaKnown RBP25.85■■□□□ 1.73
CHRNA4-209ENST00000627000 RRP7AQ9Y3A4 280 aaKnown RBP25.84■■□□□ 1.73
CHRNA4-209ENST00000627000 COL3A1P02461 1466 aaPredicted RBP25.84■■□□□ 1.73
CHRNA4-209ENST00000627000 IQSEC2Q5JU85 1478 aa25.84■■□□□ 1.73
CHRNA4-209ENST00000627000 EXOC6Q8TAG9 804 aa25.83■■□□□ 1.73
CHRNA4-209ENST00000627000 U2AF1L5P0DN76 240 aaPredicted RBP25.83■■□□□ 1.73
CHRNA4-209ENST00000627000 U2AF1Q01081 240 aaKnown RBP eCLIP25.83■■□□□ 1.73
CHRNA4-209ENST00000627000 NEUROD2Q15784 382 aa25.83■■□□□ 1.73
CHRNA4-209ENST00000627000 CCDC61Q9Y6R9 512 aa25.83■■□□□ 1.73
CHRNA4-209ENST00000627000 TCP11L2Q8N4U5 519 aa25.82■■□□□ 1.72
CHRNA4-209ENST00000627000 CDC42BPGQ6DT37 1551 aa25.82■■□□□ 1.72
CHRNA4-209ENST00000627000 WWC1Q8IX03 1113 aa25.82■■□□□ 1.72
CHRNA4-209ENST00000627000 NGEFQ8N5V2 710 aa25.82■■□□□ 1.72
CHRNA4-209ENST00000627000 FBLN1P23142 703 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms