RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 FAM50AQ14320 339 aaKnown RBP21.64■■□□□ 1.05
SNX1-214ENST00000625244 IQGAP3Q86VI3 1631 aa21.64■■□□□ 1.05
SNX1-214ENST00000625244 MARF1Q9Y4F3 1742 aaKnown RBP21.63■■□□□ 1.05
SNX1-214ENST00000625244 XPCQ01831 940 aaPredicted RBP21.63■■□□□ 1.05
SNX1-214ENST00000625244 SEPT12Q8IYM1 358 aa21.63■■□□□ 1.05
SNX1-214ENST00000625244 BRWD3Q6RI45 1802 aa21.62■■□□□ 1.05
SNX1-214ENST00000625244 NPHP3Q7Z494 1330 aa21.62■■□□□ 1.05
SNX1-214ENST00000625244 PXDNQ92626 1479 aa21.62■■□□□ 1.05
SNX1-214ENST00000625244 SLIT2O94813 1529 aa21.61■■□□□ 1.05
SNX1-214ENST00000625244 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.61■■□□□ 1.05
SNX1-214ENST00000625244 LOC105371045A0A1W2PR82 267 aa21.61■■□□□ 1.05
SNX1-214ENST00000625244 APLP2Q06481 763 aa21.61■■□□□ 1.05
SNX1-214ENST00000625244 ESCO1Q5FWF5 840 aa21.61■■□□□ 1.05
SNX1-214ENST00000625244 FOXO3O43524 673 aa21.59■■□□□ 1.05
SNX1-214ENST00000625244 NUP155O75694 1391 aa21.59■■□□□ 1.05
SNX1-214ENST00000625244 SPHKAPQ2M3C7 1700 aa21.58■■□□□ 1.05
SNX1-214ENST00000625244 NEXMIFQ5QGS0 1516 aa21.56■■□□□ 1.04
SNX1-214ENST00000625244 KRT27Q7Z3Y8 459 aa21.56■■□□□ 1.04
SNX1-214ENST00000625244 BAG6P46379 1132 aa21.55■■□□□ 1.04
SNX1-214ENST00000625244 ONECUT3O60422 494 aaPredicted RBP21.54■■□□□ 1.04
SNX1-214ENST00000625244 YY1P25490 414 aa21.53■■□□□ 1.04
SNX1-214ENST00000625244 VPS72Q15906 364 aa21.53■■□□□ 1.04
SNX1-214ENST00000625244 R3HDM1Q15032 1099 aaKnown RBP21.52■■□□□ 1.04
SNX1-214ENST00000625244 HFM1A2PYH4 1435 aa21.51■■□□□ 1.03
SNX1-214ENST00000625244 PRAG1Q86YV5 1406 aa21.5■■□□□ 1.03
SNX1-214ENST00000625244 EN1Q05925 392 aaPredicted RBP21.5■■□□□ 1.03
SNX1-214ENST00000625244 CCDC9Q9Y3X0 531 aaKnown RBP21.49■■□□□ 1.03
SNX1-214ENST00000625244 LRPPRCP42704 1394 aaKnown RBP21.48■■□□□ 1.03
SNX1-214ENST00000625244 SPATA31A3Q5VYP0 1347 aa21.48■■□□□ 1.03
SNX1-214ENST00000625244 NUTM2FA1L443 756 aa21.47■■□□□ 1.03
SNX1-214ENST00000625244 USP32Q8NFA0 1604 aa21.47■■□□□ 1.03
SNX1-214ENST00000625244 ROCK1Q13464 1354 aa21.47■■□□□ 1.03
SNX1-214ENST00000625244 CDC42BPGQ6DT37 1551 aa21.46■■□□□ 1.03
SNX1-214ENST00000625244 CLTCL1P53675 1640 aa21.44■■□□□ 1.02
SNX1-214ENST00000625244 A0A0G2JS52 829 aa21.43■■□□□ 1.02
SNX1-214ENST00000625244 VGFO15240 615 aaPredicted RBP21.43■■□□□ 1.02
SNX1-214ENST00000625244 MYT1Q01538 1121 aa21.43■■□□□ 1.02
SNX1-214ENST00000625244 CABLES1Q8TDN4 633 aa21.43■■□□□ 1.02
SNX1-214ENST00000625244 NAIPQ13075 1403 aa21.41■■□□□ 1.02
SNX1-214ENST00000625244 PLEKHG5O94827 1062 aa21.41■■□□□ 1.02
SNX1-214ENST00000625244 FAM182BQ5T319 152 aa21.41■■□□□ 1.02
SNX1-214ENST00000625244 HAP1P54257 671 aaPredicted RBP21.4■■□□□ 1.02
SNX1-214ENST00000625244 FAM98CQ17RN3 349 aaKnown RBP21.4■■□□□ 1.02
SNX1-214ENST00000625244 KRT28Q7Z3Y7 464 aa21.39■■□□□ 1.01
SNX1-214ENST00000625244 EZH2Q15910 746 aaKnown RBP21.38■■□□□ 1.01
SNX1-214ENST00000625244 UTRNP46939 3433 aa21.38■■□□□ 1.01
SNX1-214ENST00000625244 CCDC144AA2RUR9 1427 aa21.38■■□□□ 1.01
SNX1-214ENST00000625244 PLCH1Q4KWH8 1693 aa21.37■■□□□ 1.01
SNX1-214ENST00000625244 FAM83GA6ND36 823 aa21.37■■□□□ 1.01
SNX1-214ENST00000625244 WAPLQ7Z5K2 1190 aa21.37■■□□□ 1.01
SNX1-214ENST00000625244 NWD2Q9ULI1 1742 aa21.36■■□□□ 1.01
SNX1-214ENST00000625244 DISP2A7MBM2 1401 aa21.36■■□□□ 1.01
SNX1-214ENST00000625244 TNS3Q68CZ2 1445 aa21.34■■□□□ 1.01
SNX1-214ENST00000625244 RGPD1P0DJD0 1748 aa21.34■■□□□ 1.01
SNX1-214ENST00000625244 KIF1BO60333 1816 aa21.33■■□□□ 1.01
SNX1-214ENST00000625244 CAMKK2Q96RR4 588 aa21.32■■□□□ 1
SNX1-214ENST00000625244 STK26Q9P289 416 aa21.32■■□□□ 1
SNX1-214ENST00000625244 ITGAEP38570 1179 aa21.31■■□□□ 1
SNX1-214ENST00000625244 PLEKHH1Q9ULM0 1364 aa21.31■■□□□ 1
SNX1-214ENST00000625244 RPGRIP1LQ68CZ1 1315 aa21.3■■□□□ 1
SNX1-214ENST00000625244 KIF1AQ12756 1690 aa21.29■■□□□ 1
SNX1-214ENST00000625244 LMOD2Q6P5Q4 547 aa21.29■■□□□ 1
SNX1-214ENST00000625244 BTG4Q9NY30 223 aa21.29■■□□□ 1
SNX1-214ENST00000625244 TNS1Q9HBL0 1735 aaKnown RBP21.29■■□□□ 1
SNX1-214ENST00000625244 PSME1Q06323 249 aa21.28■■□□□ 1
SNX1-214ENST00000625244 PHF8Q9UPP1 1060 aa21.27■■□□□ 1
SNX1-214ENST00000625244 TECPR2O15040 1411 aa21.27■■□□□ 1
SNX1-214ENST00000625244 NRAPQ86VF7 1730 aa21.26■□□□□ 0.99
SNX1-214ENST00000625244 FMN2Q9NZ56 1722 aa21.26■□□□□ 0.99
SNX1-214ENST00000625244 SBNO1A3KN83 1393 aa21.26■□□□□ 0.99
SNX1-214ENST00000625244 TRIM37O94972 964 aa21.26■□□□□ 0.99
SNX1-214ENST00000625244 ABCA3Q99758 1704 aa21.26■□□□□ 0.99
SNX1-214ENST00000625244 SPATA31A5Q5VU36 1347 aa21.25■□□□□ 0.99
SNX1-214ENST00000625244 SPATA31A7Q8IWB4 1347 aa21.25■□□□□ 0.99
SNX1-214ENST00000625244 ARHGEF10O15013 1369 aa21.23■□□□□ 0.99
SNX1-214ENST00000625244 APBA3O96018 575 aa21.22■□□□□ 0.99
SNX1-214ENST00000625244 PPP1R1BQ9UD71 204 aaPredicted RBP21.22■□□□□ 0.99
SNX1-214ENST00000625244 PPLO60437 1756 aa21.22■□□□□ 0.99
SNX1-214ENST00000625244 ADGRF5Q8IZF2 1346 aa21.22■□□□□ 0.99
SNX1-214ENST00000625244 ABCC11Q96J66 1382 aa21.22■□□□□ 0.99
SNX1-214ENST00000625244 DCAF8L1A6NGE4 600 aa21.21■□□□□ 0.99
SNX1-214ENST00000625244 TMEM132EQ6IEE7 984 aa21.21■□□□□ 0.99
SNX1-214ENST00000625244 THSD7AQ9UPZ6 1657 aa21.2■□□□□ 0.98
SNX1-214ENST00000625244 PARD3Q8TEW0 1356 aa21.2■□□□□ 0.98
SNX1-214ENST00000625244 ADGRB2O60241 1585 aa21.19■□□□□ 0.98
SNX1-214ENST00000625244 IFFO2Q5TF58 517 aa21.19■□□□□ 0.98
SNX1-214ENST00000625244 FAM196AQ6ZSG2 479 aa21.19■□□□□ 0.98
SNX1-214ENST00000625244 NRXN1Q9ULB1 1477 aa21.19■□□□□ 0.98
SNX1-214ENST00000625244 SPON1Q9HCB6 807 aa21.18■□□□□ 0.98
SNX1-214ENST00000625244 RGPD8O14715 1765 aaPredicted RBP21.18■□□□□ 0.98
SNX1-214ENST00000625244 CEP350Q5VT06 3117 aa21.18■□□□□ 0.98
SNX1-214ENST00000625244 ZNF784Q8NCA9 323 aaPredicted RBP21.17■□□□□ 0.98
SNX1-214ENST00000625244 NINLQ9Y2I6 1382 aa21.17■□□□□ 0.98
SNX1-214ENST00000625244 KCNQ2O43526 872 aa21.16■□□□□ 0.98
SNX1-214ENST00000625244 NBPF8Q3BBV2 869 aa21.16■□□□□ 0.98
SNX1-214ENST00000625244 NBPF14Q5TI25 921 aa21.16■□□□□ 0.98
SNX1-214ENST00000625244 COL14A1Q05707 1796 aaKnown RBP21.15■□□□□ 0.98
SNX1-214ENST00000625244 SENP3-EIF4A1A0A087X0R7 540 aa21.14■□□□□ 0.97
SNX1-214ENST00000625244 PMFBP1Q8TBY8 1022 aa21.14■□□□□ 0.97
SNX1-214ENST00000625244 RRBP1Q9P2E9 1410 aaKnown RBP21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms